Variant report

Variant	rs17555655
Chromosome Location	chr2:64144829-64144830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10166971	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10175674	0.89[CHB][hapmap]
rs12463827	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12466966	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12468093	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12474366	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12475294	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12988017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12990604	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12993544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12996147	0.82[ASN][1000 genomes]
rs12997303	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12999675	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13005218	0.87[EUR][1000 genomes]
rs13007342	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13007731	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13009774	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13010817	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13014781	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13015703	0.82[ASN][1000 genomes]
rs13023542	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13025640	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13028805	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13034260	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1345479	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1437455	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1545196	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17562312	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17620012	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17701685	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17701709	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17752683	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2002443	0.82[ASN][1000 genomes]
rs2287361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2422110	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34043307	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34145077	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34196086	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34200806	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34239752	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34512058	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34683043	0.84[ASN][1000 genomes]
rs34900788	0.88[ASN][1000 genomes]
rs35058898	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35122209	0.87[EUR][1000 genomes]
rs35247801	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35253921	0.88[ASN][1000 genomes]
rs35521527	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552326	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35648996	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35693031	0.84[ASN][1000 genomes]
rs35810427	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35939512	0.80[EUR][1000 genomes]
rs35972278	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35975566	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36099158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3815616	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3934536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4075010	0.85[EUR][1000 genomes]
rs4482470	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4544421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4599090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671534	0.88[ASN][1000 genomes]
rs4671535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4671537	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671538	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4671541	0.82[EUR][1000 genomes]
rs66476638	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66535980	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66595136	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66650505	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66660401	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66993685	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6730664	0.80[EUR][1000 genomes]
rs67366434	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6759803	0.80[EUR][1000 genomes]
rs67962955	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71422402	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72808216	0.87[EUR][1000 genomes]
rs72808218	0.84[EUR][1000 genomes]
rs72808231	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808236	0.86[ASN][1000 genomes]
rs72808248	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808254	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808262	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808287	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7349403	0.89[CHB][hapmap]
rs874695	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs893779	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv521717	chr2:64104132-64186582	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64114200-64174800	Weak transcription	Right Ventricle	heart
3	chr2:64118200-64153600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:64129600-64153200	Weak transcription	Thymus	Thymus
5	chr2:64129600-64153600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:64129600-64153600	Weak transcription	Aorta	Aorta
7	chr2:64129600-64153600	Weak transcription	Pancreas	Pancrea
8	chr2:64129600-64154000	Weak transcription	Colonic Mucosa	Colon
9	chr2:64129600-64164000	Weak transcription	NHLF	lung
10	chr2:64129600-64201000	Weak transcription	Hela-S3	cervix
11	chr2:64129800-64154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:64130000-64153200	Weak transcription	Gastric	stomach
13	chr2:64130000-64153600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr2:64130000-64153800	Weak transcription	Esophagus	oesophagus
15	chr2:64130200-64149200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr2:64130200-64153200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:64130200-64153600	Weak transcription	Fetal Intestine Small	intestine
18	chr2:64130200-64153600	Weak transcription	Ovary	ovary
19	chr2:64130200-64153800	Weak transcription	Fetal Stomach	stomach
20	chr2:64130400-64155000	Strong transcription	HepG2	liver
21	chr2:64130400-64167600	Weak transcription	Fetal Heart	heart
22	chr2:64130400-64168400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:64130400-64211200	Weak transcription	Fetal Brain Male	brain
24	chr2:64130600-64153600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:64130600-64168000	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:64130800-64174800	Weak transcription	Stomach Mucosa	stomach
27	chr2:64131000-64154200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr2:64131400-64155000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr2:64132000-64154200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr2:64132200-64147600	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:64132600-64147800	Strong transcription	Liver	Liver
32	chr2:64132800-64146000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:64132800-64147400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:64133800-64147600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:64133800-64149800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:64134000-64147800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:64134000-64153800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr2:64134000-64153800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr2:64134000-64154000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:64134200-64153600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr2:64134800-64149000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:64135200-64149200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:64135400-64147200	Strong transcription	Adipose Nuclei	Adipose
44	chr2:64135400-64149200	Strong transcription	Fetal Intestine Large	intestine
45	chr2:64135800-64148400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr2:64136200-64146600	Weak transcription	Brain Germinal Matrix	brain
47	chr2:64136200-64152400	Weak transcription	Fetal Brain Female	brain
48	chr2:64137200-64147800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:64137200-64147800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr2:64137400-64154800	Strong transcription	Primary B cells from cord blood	blood

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