Variant report

Variant	rs13073704
Chromosome Location	chr3:144183817-144183818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13059839	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13064218	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13068992	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13078166	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13086374	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16855622	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2010067	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2010077	0.83[AMR][1000 genomes]
rs34053264	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34213147	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34636454	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34666814	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34911291	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34940844	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35090257	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35320086	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35957809	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36000128	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60851816	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6762786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6776303	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6787553	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6791184	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71307975	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71307977	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71621113	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7623763	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv591929	chr3:144123401-144188561	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144181400-144185800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:144181400-144188400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:144183600-144184000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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