Variant report

Variant	rs71621113
Chromosome Location	chr3:144235555-144235556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144231778..144234120-chr3:144234556..144237249,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1178896	0.83[AFR][1000 genomes]
rs1182797	0.84[AFR][1000 genomes]
rs11926933	0.81[EUR][1000 genomes]
rs12107175	0.84[EUR][1000 genomes]
rs13059839	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13064218	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13068992	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13073704	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13078166	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13084703	0.87[EUR][1000 genomes]
rs13086374	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16855622	0.91[EUR][1000 genomes]
rs16855668	0.84[EUR][1000 genomes]
rs2010067	0.91[EUR][1000 genomes]
rs2010077	0.89[EUR][1000 genomes]
rs34053264	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34213147	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34227150	0.84[EUR][1000 genomes]
rs34636454	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34666814	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34911291	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34940844	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35090257	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35320086	0.91[EUR][1000 genomes]
rs35516992	0.84[EUR][1000 genomes]
rs35957809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36000128	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57312086	0.87[EUR][1000 genomes]
rs60851816	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6762786	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6773294	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6776303	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6783954	0.84[EUR][1000 genomes]
rs6787553	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6791184	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6793949	0.84[EUR][1000 genomes]
rs6796913	0.87[EUR][1000 genomes]
rs71307975	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71307977	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71307981	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144234400-144235800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:144234600-144235800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:144235000-144235600	Enhancers	Fetal Lung	lung
4	chr3:144235000-144235800	Enhancers	Brain Hippocampus Middle	brain

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