Variant report

Variant	rs6783954
Chromosome Location	chr3:144312402-144312403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10490829	0.85[EUR][1000 genomes]
rs12107175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13059839	0.89[EUR][1000 genomes]
rs13064218	0.85[EUR][1000 genomes]
rs13068646	0.85[EUR][1000 genomes]
rs13068992	0.89[EUR][1000 genomes]
rs13075496	0.84[EUR][1000 genomes]
rs13078166	0.85[EUR][1000 genomes]
rs13084703	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13086374	0.85[EUR][1000 genomes]
rs16855622	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16855668	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2010067	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2010077	0.91[EUR][1000 genomes]
rs34053264	0.85[EUR][1000 genomes]
rs34213147	0.89[EUR][1000 genomes]
rs34227150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34636454	0.85[EUR][1000 genomes]
rs34666814	0.89[EUR][1000 genomes]
rs34911291	0.85[EUR][1000 genomes]
rs35090257	0.89[EUR][1000 genomes]
rs35320086	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35324981	0.82[EUR][1000 genomes]
rs35516992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35957809	0.85[EUR][1000 genomes]
rs36000128	0.89[EUR][1000 genomes]
rs55650825	0.85[EUR][1000 genomes]
rs57312086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60851816	0.85[EUR][1000 genomes]
rs6776303	0.85[EUR][1000 genomes]
rs6787553	0.85[EUR][1000 genomes]
rs6793949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796913	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307975	0.85[EUR][1000 genomes]
rs71307977	0.85[EUR][1000 genomes]
rs71307981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71307982	0.85[EUR][1000 genomes]
rs71307983	0.85[EUR][1000 genomes]
rs71621113	0.84[EUR][1000 genomes]
rs7615388	0.85[EUR][1000 genomes]
rs7639413	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv877572	chr3:144244265-144312402	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv877573	chr3:144265840-144323993	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144305600-144312600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:144311400-144313800	Weak transcription	HUVEC	blood vessel

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