Variant report

Variant	rs36000128
Chromosome Location	chr3:144237657-144237658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143688586..143691130-chr3:144236115..144237811,2	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12106820	0.83[EUR][1000 genomes]
rs12107175	0.89[EUR][1000 genomes]
rs13059839	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13064218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13068992	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13073704	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13078166	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13084703	0.93[EUR][1000 genomes]
rs13086374	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16855622	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16855668	0.89[EUR][1000 genomes]
rs2010067	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2010077	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2889043	0.80[AFR][1000 genomes]
rs34053264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34213147	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34217903	0.83[EUR][1000 genomes]
rs34227150	0.89[EUR][1000 genomes]
rs34636454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34666814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34892796	0.83[EUR][1000 genomes]
rs34911291	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34940844	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35090257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35118386	0.83[EUR][1000 genomes]
rs35127961	0.83[EUR][1000 genomes]
rs35320086	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35516992	0.89[EUR][1000 genomes]
rs35691495	0.83[EUR][1000 genomes]
rs35817971	0.83[EUR][1000 genomes]
rs35957809	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35986789	0.83[EUR][1000 genomes]
rs57312086	0.93[EUR][1000 genomes]
rs57959140	0.83[EUR][1000 genomes]
rs58805587	0.83[EUR][1000 genomes]
rs60851816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66899526	0.81[EUR][1000 genomes]
rs6762786	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6763485	0.83[EUR][1000 genomes]
rs67706818	0.83[EUR][1000 genomes]
rs6773294	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6776303	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6783954	0.89[EUR][1000 genomes]
rs6787553	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6791184	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6793949	0.89[EUR][1000 genomes]
rs6796913	0.93[EUR][1000 genomes]
rs71307975	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307977	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307981	0.89[EUR][1000 genomes]
rs71621113	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7623763	0.85[AMR][1000 genomes]
rs7629865	0.83[EUR][1000 genomes]
rs7629872	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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