Variant report

Variant	rs6796913
Chromosome Location	chr3:144287811-144287812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10490829	0.82[EUR][1000 genomes]
rs12107175	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13059839	0.93[EUR][1000 genomes]
rs13064218	0.89[EUR][1000 genomes]
rs13068646	0.82[EUR][1000 genomes]
rs13068992	0.93[EUR][1000 genomes]
rs13075496	0.81[EUR][1000 genomes]
rs13078166	0.89[EUR][1000 genomes]
rs13084703	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13086374	0.89[EUR][1000 genomes]
rs16855622	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16855668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2010067	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2010077	0.94[EUR][1000 genomes]
rs34053264	0.89[EUR][1000 genomes]
rs34213147	0.93[EUR][1000 genomes]
rs34227150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34636454	0.89[EUR][1000 genomes]
rs34666814	0.93[EUR][1000 genomes]
rs34911291	0.89[EUR][1000 genomes]
rs34940844	0.81[EUR][1000 genomes]
rs35090257	0.93[EUR][1000 genomes]
rs35320086	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35324981	0.85[EUR][1000 genomes]
rs35516992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35957809	0.89[EUR][1000 genomes]
rs36000128	0.93[EUR][1000 genomes]
rs55650825	0.82[EUR][1000 genomes]
rs57312086	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60851816	0.89[EUR][1000 genomes]
rs6776303	0.89[EUR][1000 genomes]
rs6783954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6787553	0.89[EUR][1000 genomes]
rs6793949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307975	0.89[EUR][1000 genomes]
rs71307977	0.89[EUR][1000 genomes]
rs71307981	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307982	0.82[EUR][1000 genomes]
rs71307983	0.82[EUR][1000 genomes]
rs71621113	0.87[EUR][1000 genomes]
rs7615388	0.82[EUR][1000 genomes]
rs7639413	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv877572	chr3:144244265-144312402	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv877573	chr3:144265840-144323993	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv437344	chr3:144277333-144302713	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv437345	chr3:144277333-144302713	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv436364	chr3:144280834-144292686	Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv10335	chr3:144280969-144292155	Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3462598	chr3:144281390-144292692	Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3462600	chr3:144281437-144292669	Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3462599	chr3:144281455-144292653	Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3462601	chr3:144281461-144292618	Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv20804	chr3:144281519-144292534	Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3462602	chr3:144281525-144292588	Enhancers	n/a	n/a	inside rSNPs	diseases
23	nsv1009227	chr3:144283031-144294326	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3692794	chr3:144283642-144291254	Enhancers	n/a	n/a	inside rSNPs	diseases
25	nsv516101	chr3:144283642-144291254	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144287800-144289400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links