Variant report

Variant	rs13086374
Chromosome Location	chr3:144213804-144213805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11926933	0.83[EUR][1000 genomes]
rs12107175	0.85[EUR][1000 genomes]
rs13059839	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13064218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13068992	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13073704	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13078166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13084703	0.89[EUR][1000 genomes]
rs16855622	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16855668	0.85[EUR][1000 genomes]
rs2010067	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2010077	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34053264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34213147	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34227150	0.85[EUR][1000 genomes]
rs34636454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34666814	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34911291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34940844	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35090257	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35320086	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35516992	0.85[EUR][1000 genomes]
rs35957809	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36000128	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57312086	0.89[EUR][1000 genomes]
rs60851816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762786	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6773294	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6776303	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6783954	0.85[EUR][1000 genomes]
rs6787553	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791184	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6793949	0.85[EUR][1000 genomes]
rs6796913	0.89[EUR][1000 genomes]
rs71307975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71307977	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71307981	0.85[EUR][1000 genomes]
rs71621113	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7623763	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144210800-144215400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:144213200-144215000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links