Variant report

Variant	rs2010067
Chromosome Location	chr3:144271654-144271655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12107175	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13059839	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13064218	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13068992	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13073704	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13078166	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13084703	0.96[EUR][1000 genomes]
rs13086374	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16855622	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16855668	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2010077	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34053264	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34213147	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34227150	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34636454	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34666814	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34911291	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34940844	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35090257	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35320086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35324981	0.82[EUR][1000 genomes]
rs35516992	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35957809	0.93[EUR][1000 genomes]
rs36000128	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57312086	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs60851816	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6762786	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6773294	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6776303	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6783954	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6787553	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6791184	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6793949	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6796913	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71307975	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71307977	0.93[EUR][1000 genomes]
rs71307981	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71621113	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1001888	chr3:144239415-144272509	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536753	chr3:144239415-144272509	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv877572	chr3:144244265-144312402	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1012719	chr3:144264442-144283362	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv877573	chr3:144265840-144323993	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1014395	chr3:144268563-144283849	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144268400-144272400	Weak transcription	Fetal Lung	lung
2	chr3:144268800-144271800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:144268800-144272000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:144268800-144272200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:144269000-144271800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:144269000-144271800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:144269000-144274000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:144269200-144272000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:144269200-144272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:144269400-144272000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:144270800-144273000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:144271000-144272800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:144271200-144271800	Enhancers	Fetal Intestine Small	intestine
14	chr3:144271400-144272400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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