Variant report

Variant	rs13068992
Chromosome Location	chr3:144258212-144258213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12106820	0.83[EUR][1000 genomes]
rs12107175	0.89[EUR][1000 genomes]
rs13059839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13064218	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13073704	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13078166	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13084703	0.93[EUR][1000 genomes]
rs13086374	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16855622	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16855668	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs2010067	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2010077	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34053264	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34213147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34217903	0.83[EUR][1000 genomes]
rs34227150	0.89[EUR][1000 genomes]
rs34636454	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34666814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34892796	0.83[EUR][1000 genomes]
rs34911291	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34940844	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35090257	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35118386	0.83[EUR][1000 genomes]
rs35127961	0.83[EUR][1000 genomes]
rs35320086	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35516992	0.89[EUR][1000 genomes]
rs35691495	0.83[EUR][1000 genomes]
rs35817971	0.83[EUR][1000 genomes]
rs35957809	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35986789	0.83[EUR][1000 genomes]
rs36000128	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57312086	0.93[EUR][1000 genomes]
rs57959140	0.83[EUR][1000 genomes]
rs58805587	0.83[EUR][1000 genomes]
rs60851816	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66899526	0.81[EUR][1000 genomes]
rs6762786	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6763485	0.83[EUR][1000 genomes]
rs67706818	0.83[EUR][1000 genomes]
rs6773294	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6776303	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6783954	0.89[EUR][1000 genomes]
rs6787553	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6791184	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6793949	0.89[EUR][1000 genomes]
rs6796913	0.93[EUR][1000 genomes]
rs71307975	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307977	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71307981	0.89[EUR][1000 genomes]
rs71621113	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7623763	0.84[AMR][1000 genomes]
rs7629865	0.83[EUR][1000 genomes]
rs7629872	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1001888	chr3:144239415-144272509	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536753	chr3:144239415-144272509	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv877572	chr3:144244265-144312402	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144255200-144259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links