Variant report

Variant	rs1308149
Chromosome Location	chr1:151674923-151674924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151668533..151670449-chr1:151674606..151677478,3	MCF-7	breast:
2	chr1:151671136..151674505-chr1:151674889..151678422,3	K562	blood:
3	chr1:151674334..151676569-chr1:151677711..151679757,3	MCF-7	breast:
4	chr1:151671136..151673707-chr1:151674889..151677650,3	K562	blood:
5	chr1:151674905..151676971-chr1:151691184..151693969,2	MCF-7	breast:
6	chr1:151674632..151676262-chr1:151762381..151764969,2	MCF-7	breast:
7	chr1:151672629..151675087-chr1:151680419..151682673,2	K562	blood:

Variant related genes	Relation type
ENSG00000159409	Chromatin interaction
ENSG00000227045	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000182134	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11204853	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11204865	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1196344	0.87[ASN][1000 genomes]
rs1196346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196347	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196355	0.84[ASN][1000 genomes]
rs1196356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1196453	1.00[CEU][hapmap]
rs1196455	1.00[CEU][hapmap]
rs1196460	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1196461	0.94[ASN][1000 genomes]
rs1196463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196470	0.85[JPT][hapmap]
rs12031503	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs12040549	1.00[CEU][hapmap]
rs1308135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1308136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1308142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1308151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1308153	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1308155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1308156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1521179	1.00[CEU][hapmap]
rs1625039	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1781409	0.93[JPT][hapmap]
rs1781413	1.00[CEU][hapmap]
rs1781417	1.00[CEU][hapmap]
rs1781432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1781435	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2488486	0.83[ASN][1000 genomes]
rs2489893	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2495395	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2997072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3762302	0.87[YRI][hapmap]
rs3790505	0.89[CHB][hapmap]
rs3790513	1.00[CEU][hapmap]
rs3811413	1.00[CEU][hapmap]
rs4845778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
4	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
8	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:151664400-151675400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr1:151664600-151675000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:151665400-151676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:151666000-151685400	Weak transcription	A549	lung
15	chr1:151666400-151675800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:151666600-151676000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:151667000-151687400	Weak transcription	K562	blood
18	chr1:151667200-151675400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:151667800-151686000	Weak transcription	HMEC	breast
20	chr1:151669600-151681200	Strong transcription	Fetal Brain Female	brain
21	chr1:151670000-151676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
23	chr1:151670400-151675600	Weak transcription	Fetal Brain Male	brain
24	chr1:151670600-151675000	Weak transcription	Hela-S3	cervix
25	chr1:151671200-151675800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:151671400-151682600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:151672000-151678000	Weak transcription	Stomach Mucosa	stomach
28	chr1:151672200-151675400	Weak transcription	HUVEC	blood vessel
29	chr1:151672200-151680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:151672400-151684800	Weak transcription	Small Intestine	intestine
31	chr1:151672800-151675400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:151672800-151678400	Weak transcription	Colonic Mucosa	Colon
33	chr1:151673000-151675600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr1:151673000-151675600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr1:151673200-151675800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:151673200-151677000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:151673600-151678600	Strong transcription	Brain Germinal Matrix	brain
38	chr1:151673800-151676400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr1:151673800-151677000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:151673800-151680400	Strong transcription	Fetal Intestine Large	intestine
41	chr1:151673800-151682400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:151673800-151685200	Weak transcription	Fetal Kidney	kidney
43	chr1:151674000-151675400	Weak transcription	Dnd41	blood
44	chr1:151674000-151676000	Strong transcription	Fetal Intestine Small	intestine
45	chr1:151674000-151676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr1:151674000-151677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:151674000-151677200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:151674000-151677400	Weak transcription	Osteobl	bone
49	chr1:151674000-151677800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:151674000-151677800	Weak transcription	Rectal Mucosa Donor 31	rectum

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