Variant report

Variant	rs1308151
Chromosome Location	chr1:151678641-151678642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:151678223-151678699	MCF-7	breast:	n/a	n/a
2	RAD21	chr1:151678171-151678838	MCF-7	breast:	n/a	n/a
3	POLR2A	chr1:151678147-151680594	H1-neurons	neurons:	n/a	n/a
4	RAD21	chr1:151678174-151678698	MCF-7	breast:	n/a	n/a
5	JUN	chr1:151678020-151678684	K562	blood:	n/a	n/a
6	POLR2A	chr1:151675065-151679627	H1-neurons	neurons:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151677618..151679367-chr1:151711033..151713298,2	MCF-7	breast:
2	chr1:151677452..151679689-chr1:151734697..151737638,2	MCF-7	breast:
3	chr1:151677367..151680039-chr1:151802606..151805197,3	MCF-7	breast:
4	chr1:151677702..151679234-chr1:151685663..151687582,2	K562	blood:
5	chr1:151678027..151678884-chr1:151707284..151708098,3	MCF-7	breast:
6	chr1:151678494..151680189-chr1:151689404..151690946,2	K562	blood:
7	chr1:151674334..151676569-chr1:151677711..151679757,3	MCF-7	breast:
8	chr1:151677595..151679984-chr1:151683063..151685340,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000240510	TF binding region
RIIAD1	TF binding region
ENSG00000143436	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000143365	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11204853	1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs11204865	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196344	0.84[ASN][1000 genomes]
rs1196346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196347	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1196355	0.81[ASN][1000 genomes]
rs1196356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1196453	1.00[CEU][hapmap]
rs1196455	1.00[CEU][hapmap]
rs1196460	0.91[ASN][1000 genomes]
rs1196461	0.91[ASN][1000 genomes]
rs1196463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196470	0.87[JPT][hapmap]
rs12031503	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs12040549	1.00[CEU][hapmap]
rs1308135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1308136	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1308142	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1308149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1308153	1.00[ASW][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1308155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1308156	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1521179	1.00[CEU][hapmap]
rs1625039	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1781409	0.87[JPT][hapmap]
rs1781413	1.00[CEU][hapmap]
rs1781417	1.00[CEU][hapmap]
rs1781432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1781435	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2488486	0.80[ASN][1000 genomes]
rs2489893	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2495395	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2997072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3762302	0.83[ASN][1000 genomes]
rs3790505	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3790513	1.00[CEU][hapmap]
rs3811413	1.00[CEU][hapmap]
rs4845778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151666000-151685400	Weak transcription	A549	lung
3	chr1:151667000-151687400	Weak transcription	K562	blood
4	chr1:151667800-151686000	Weak transcription	HMEC	breast
5	chr1:151669600-151681200	Strong transcription	Fetal Brain Female	brain
6	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
7	chr1:151671400-151682600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:151672200-151680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:151672400-151684800	Weak transcription	Small Intestine	intestine
10	chr1:151673800-151680400	Strong transcription	Fetal Intestine Large	intestine
11	chr1:151673800-151682400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:151673800-151685200	Weak transcription	Fetal Kidney	kidney
13	chr1:151674000-151682400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:151674000-151685400	Weak transcription	Gastric	stomach
15	chr1:151674200-151679800	Weak transcription	Right Ventricle	heart
16	chr1:151674200-151683200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:151674200-151683200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:151674400-151679400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:151674600-151681800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:151674600-151682400	Weak transcription	Brain Substantia Nigra	brain
22	chr1:151674600-151682600	Weak transcription	Brain Hippocampus Middle	brain
23	chr1:151674600-151683200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:151674600-151683200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:151674600-151685200	Weak transcription	Fetal Lung	lung
26	chr1:151674600-151686000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:151674800-151679400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:151674800-151681800	Weak transcription	Brain Angular Gyrus	brain
29	chr1:151674800-151686200	Weak transcription	Esophagus	oesophagus
30	chr1:151675400-151681400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:151675800-151678800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:151675800-151679600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr1:151675800-151681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:151676000-151678800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:151676200-151679200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr1:151676200-151682400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:151676400-151679400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:151676600-151679200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:151676600-151680000	Weak transcription	Spleen	Spleen
40	chr1:151677000-151679000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:151677000-151679200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:151677000-151681800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:151677200-151679200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:151677200-151679200	Strong transcription	Fetal Intestine Small	intestine
45	chr1:151677600-151679200	Weak transcription	Fetal Brain Male	brain
46	chr1:151677800-151678800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:151677800-151678800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:151677800-151679400	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr1:151677800-151679600	Enhancers	Duodenum Mucosa	Duodenum
50	chr1:151677800-151679800	Weak transcription	Placenta Amnion	Placenta Amnion

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