Variant report

Variant	rs2495395
Chromosome Location	chr1:151662113-151662114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151661381..151663543-chr1:151810484..151814087,3	MCF-7	breast:
2	chr1:151659536..151662193-chr1:151663532..151665631,2	MCF-7	breast:
3	chr1:151511114..151512930-chr1:151660748..151663567,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225556	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11204853	0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs11204865	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1196344	0.85[ASN][1000 genomes]
rs1196346	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196347	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196348	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196349	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196351	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1196355	0.83[ASN][1000 genomes]
rs1196356	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1196453	1.00[CEU][hapmap]
rs1196455	1.00[CEU][hapmap]
rs1196460	0.93[ASN][1000 genomes]
rs1196461	0.93[ASN][1000 genomes]
rs1196463	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196470	0.87[JPT][hapmap]
rs12031503	0.90[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap]
rs12040549	1.00[CEU][hapmap]
rs1308135	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1308136	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1308142	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1308149	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1308151	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1308153	0.88[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap]
rs1308155	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1308156	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1521179	1.00[CEU][hapmap]
rs1625039	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1781409	0.87[JPT][hapmap]
rs1781413	1.00[CEU][hapmap]
rs1781417	1.00[CEU][hapmap]
rs1781432	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1781435	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2488486	0.82[ASN][1000 genomes]
rs2489893	0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2997072	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3762302	0.81[CHB][hapmap]
rs3790505	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs3790513	1.00[CEU][hapmap]
rs3811413	1.00[CEU][hapmap]
rs4845778	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
2	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
4	chr1:151610600-151665000	Weak transcription	Lung	lung
5	chr1:151611600-151668200	Weak transcription	Gastric	stomach
6	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
9	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
11	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
14	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
15	chr1:151642000-151665000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:151642200-151665000	Weak transcription	K562	blood
17	chr1:151642800-151665000	Weak transcription	Fetal Brain Female	brain
18	chr1:151643000-151665000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:151643600-151665000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:151644000-151664600	Weak transcription	Fetal Thymus	thymus
22	chr1:151644000-151665000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:151644000-151665000	Weak transcription	Brain Angular Gyrus	brain
24	chr1:151644000-151665000	Weak transcription	Pancreas	Pancrea
25	chr1:151644200-151664400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:151644200-151665000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:151644200-151665000	Weak transcription	Ovary	ovary
28	chr1:151644200-151665200	Weak transcription	Brain Substantia Nigra	brain
29	chr1:151644400-151665000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:151644800-151665200	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:151646600-151665800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:151650600-151663400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr1:151651200-151664800	Weak transcription	Brain Germinal Matrix	brain
34	chr1:151653400-151665000	Weak transcription	HSMM	muscle
35	chr1:151653400-151669400	Weak transcription	HSMMtube	muscle
36	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
37	chr1:151653600-151662200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr1:151653600-151665000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr1:151653600-151665000	Weak transcription	Osteobl	bone
40	chr1:151653600-151665200	Weak transcription	NHDF-Ad	bronchial
41	chr1:151654200-151665000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:151654600-151665000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:151654600-151666200	Weak transcription	HMEC	breast
44	chr1:151654800-151664800	Weak transcription	NHEK	skin
45	chr1:151654800-151665000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:151654800-151665000	Weak transcription	A549	lung
47	chr1:151654800-151665000	Weak transcription	Hela-S3	cervix
48	chr1:151654800-151665200	Weak transcription	NH-A	brain
49	chr1:151654800-151665200	Weak transcription	NHLF	lung
50	chr1:151654800-151666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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