Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr1:151696078-151697155	MCF-7	breast:	n/a	n/a
2	SIN3AK20	chr1:151696060-151697029	MCF-7	breast:	n/a	n/a
3	CTCF	chr1:151696760-151696910	Caco-2	colon:	n/a	n/a
4	SIN3AK20	chr1:151696228-151696904	MCF-7	breast:	n/a	n/a
5	GATA3	chr1:151696072-151696957	T-47D	breast:	n/a	chr1:151696250-151696258 chr1:151696679-151696689
6	TCF7L2	chr1:151696383-151696939	MCF-7	breast:	n/a	n/a
7	GATA3	chr1:151696014-151696915	MCF-7	breast:	n/a	chr1:151696250-151696258 chr1:151696679-151696689
8	CEBPB	chr1:151696090-151696917	MCF-7	breast:	n/a	n/a
9	GATA3	chr1:151696062-151697071	MCF-7	breast:	n/a	chr1:151696250-151696258 chr1:151696679-151696689

No.	Distal block	Cell Line	Cell type
1	chr1:151689202..151691084-chr1:151695441..151698309,2	K562	blood:
2	chr1:151695412..151698271-chr1:151700023..151702463,3	MCF-7	breast:
3	chr1:151510464..151513293-chr1:151695020..151697048,2	MCF-7	breast:
4	chr1:151688250..151693808-chr1:151695165..151699893,8	MCF-7	breast:
5	chr1:151686961..151689488-chr1:151695331..151696983,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1196346	0.87[JPT][hapmap]
rs1196348	0.87[JPT][hapmap]
rs1196349	0.86[JPT][hapmap]
rs1196351	0.87[JPT][hapmap]
rs1196356	0.87[JPT][hapmap]
rs1196453	0.86[CHB][hapmap]
rs1196455	0.89[ASW][hapmap];0.81[CHB][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.82[YRI][hapmap]
rs1196463	0.87[JPT][hapmap]
rs1196470	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1308135	0.87[JPT][hapmap]
rs1308142	0.87[JPT][hapmap]
rs1308149	0.93[JPT][hapmap]
rs1308151	0.87[JPT][hapmap]
rs1308153	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1308154	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1308155	0.87[JPT][hapmap]
rs1308156	0.87[JPT][hapmap]
rs1781413	0.86[CHB][hapmap]
rs1781417	0.90[CHB][hapmap]
rs1781432	0.87[JPT][hapmap]
rs2495395	0.87[JPT][hapmap]
rs2997072	0.87[JPT][hapmap]
rs3762302	0.90[CHB][hapmap]
rs4845778	0.87[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1781409	OAZ3	cis	lymphoblastoid	seeQTL
rs1781409	OAZ3	cis	multi-tissue	Pritchard

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151694400-151697200	Weak transcription	A549	lung
2	chr1:151694600-151699200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:151694600-151700000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:151694800-151700000	Weak transcription	Brain Anterior Caudate	brain
5	chr1:151695000-151700400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:151696200-151697000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:151696200-151697200	Bivalent Enhancer	HepG2	liver
8	chr1:151696400-151697000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:151696400-151697000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr1:151696400-151697000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr1:151696400-151697200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr1:151696600-151697000	Bivalent Enhancer	Stomach Mucosa	stomach
13	chr1:151696600-151697200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:151696600-151697200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr1:151696800-151697000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:151696800-151697000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr1:151696800-151697000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr1:151696800-151697000	Enhancers	Fetal Intestine Small	intestine
19	chr1:151696800-151697000	Enhancers	Ovary	ovary
20	chr1:151696800-151697200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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