Variant report

Variant	rs4845778
Chromosome Location	chr1:151637150-151637151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151635491..151637643-chr1:151639021..151640901,2	K562	blood:
2	chr1:151630604..151632996-chr1:151635401..151638302,2	MCF-7	breast:
3	chr1:151584446..151586041-chr1:151636707..151638875,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143376	Chromatin interaction
ENSG00000250734	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11204853	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11204865	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196344	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1196346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196347	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196355	0.87[ASN][1000 genomes]
rs1196356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196453	1.00[CEU][hapmap]
rs1196455	1.00[CEU][hapmap]
rs1196460	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1196461	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1196463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196470	0.81[JPT][hapmap]
rs12031503	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12040549	1.00[CEU][hapmap]
rs1308135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1308136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1308142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1308149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1308151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1308153	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1308155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1308156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1521179	1.00[CEU][hapmap]
rs1539493	1.00[CEU][hapmap]
rs1625039	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833274	1.00[CEU][hapmap]
rs1781409	0.87[JPT][hapmap]
rs1781413	1.00[CEU][hapmap]
rs1781417	1.00[CEU][hapmap]
rs1781432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1781435	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488486	0.85[ASN][1000 genomes]
rs2489893	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2495395	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2997072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3790505	0.90[CHB][hapmap]
rs3790513	1.00[CEU][hapmap]
rs3811413	1.00[CEU][hapmap]
rs57549133	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2843	chr1:151600069-151644709	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151587600-151640600	Weak transcription	Fetal Brain Male	brain
2	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
3	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:151594000-151652800	Weak transcription	Right Ventricle	heart
5	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
6	chr1:151610600-151652200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:151610600-151665000	Weak transcription	Lung	lung
8	chr1:151611600-151637600	Weak transcription	Fetal Heart	heart
9	chr1:151611600-151639800	Weak transcription	K562	blood
10	chr1:151611600-151640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:151611600-151643800	Weak transcription	Pancreas	Pancrea
12	chr1:151611600-151668200	Weak transcription	Gastric	stomach
13	chr1:151612800-151652400	Weak transcription	HMEC	breast
14	chr1:151618000-151642600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:151622800-151643600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:151623000-151641600	Weak transcription	Ovary	ovary
18	chr1:151625600-151644800	Strong transcription	Dnd41	blood
19	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:151627200-151638200	Weak transcription	GM12878-XiMat	blood
21	chr1:151627200-151655600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:151627200-151659800	Weak transcription	Spleen	Spleen
23	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
24	chr1:151627400-151638800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:151628000-151646000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr1:151628200-151652800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
29	chr1:151629200-151643400	Weak transcription	Brain Substantia Nigra	brain
30	chr1:151629600-151642400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:151630000-151639000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr1:151630600-151638800	Strong transcription	Liver	Liver
33	chr1:151631000-151643800	Weak transcription	A549	lung
34	chr1:151631200-151652000	Weak transcription	NHEK	skin
35	chr1:151631200-151652800	Weak transcription	NHLF	lung
36	chr1:151631400-151642400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr1:151631600-151639000	Weak transcription	Brain Germinal Matrix	brain
38	chr1:151632000-151643200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr1:151632200-151640600	Weak transcription	Brain Angular Gyrus	brain
40	chr1:151632200-151642000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:151632200-151643600	Weak transcription	Fetal Stomach	stomach
42	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr1:151632400-151637400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr1:151632400-151640600	Weak transcription	Brain Anterior Caudate	brain
46	chr1:151632400-151643600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:151632400-151652600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
49	chr1:151632600-151641000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr1:151632600-151641400	Weak transcription	H1 Cell Line	embryonic stem cell

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