Variant report

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151664863..151666214-chr1:151706833..151708161,20	MCF-7	breast:
2	chr1:151506897..151508009-chr1:151707195..151708125,3	MCF-7	breast:
3	chr1:151678027..151678884-chr1:151707284..151708098,3	MCF-7	breast:
4	chr1:151707202..151708163-chr1:151808657..151809536,5	MCF-7	breast:
5	chr1:151510750..151514940-chr1:151703475..151709245,7	MCF-7	breast:
6	chr1:151507305..151507885-chr1:151707200..151707767,3	K562	blood:
7	chr1:151694033..151697219-chr1:151705160..151709175,3	MCF-7	breast:
8	chr1:151566273..151567264-chr1:151706982..151708132,6	MCF-7	breast:
9	chr1:151665154..151666195-chr1:151707215..151708114,3	K562	blood:
10	chr1:151512093..151515440-chr1:151705130..151708821,4	MCF-7	breast:
11	chr1:151507045..151507835-chr1:151707201..151707791,4	MCF-7	breast:
12	chr1:151431956..151432631-chr1:151707245..151708154,2	K562	blood:
13	chr1:151416011..151416974-chr1:151707307..151708154,3	K562	blood:
14	chr1:151707320..151708173-chr1:151808673..151809435,3	MCF-7	breast:
15	chr1:151664791..151666370-chr1:151707222..151708158,5	MCF-7	breast:
16	chr1:151566513..151567202-chr1:151707541..151708055,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10888432	0.85[ASW][hapmap]
rs10888433	0.85[ASW][hapmap]
rs1196346	1.00[CEU][hapmap]
rs1196348	1.00[CEU][hapmap]
rs1196349	1.00[CEU][hapmap]
rs1196351	1.00[CEU][hapmap]
rs1196356	1.00[CEU][hapmap]
rs1196453	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196454	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1196455	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1196463	1.00[CEU][hapmap]
rs1196470	0.83[AMR][1000 genomes]
rs12040549	1.00[CEU][hapmap]
rs1308135	1.00[CEU][hapmap]
rs1308142	1.00[CEU][hapmap]
rs1308149	1.00[CEU][hapmap]
rs1308151	1.00[CEU][hapmap]
rs1308155	1.00[CEU][hapmap]
rs1308156	1.00[CEU][hapmap]
rs1521179	1.00[CEU][hapmap]
rs1781409	0.90[CHB][hapmap]
rs1781413	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1781432	1.00[CEU][hapmap]
rs2495395	1.00[CEU][hapmap]
rs2997072	1.00[CEU][hapmap]
rs3762302	0.80[CHB][hapmap]
rs3790513	1.00[CEU][hapmap]
rs3811413	1.00[CEU][hapmap]
rs4845778	1.00[CEU][hapmap]
rs6692364	0.85[ASW][hapmap]
rs8480	0.85[ASW][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1781417	OAZ3	cis	lymphoblastoid	seeQTL
rs1781417	OAZ3	cis	multi-tissue	Pritchard

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151700800-151709800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:151702200-151709800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:151702600-151709600	Weak transcription	Right Atrium	heart
4	chr1:151702800-151712200	Weak transcription	Stomach Mucosa	stomach
5	chr1:151707200-151708000	Enhancers	A549	lung
6	chr1:151707400-151707800	Enhancers	Brain Angular Gyrus	brain
7	chr1:151707400-151707800	Enhancers	Brain Anterior Caudate	brain
8	chr1:151707400-151707800	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:151707400-151707800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:151707400-151707800	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:151707400-151707800	Enhancers	Fetal Intestine Small	intestine
12	chr1:151707400-151707800	Enhancers	Pancreas	Pancrea
13	chr1:151707400-151707800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:151707400-151708000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:151707400-151708000	Enhancers	Hela-S3	cervix
16	chr1:151707600-151708000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:151707600-151708000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:151707600-151709800	Weak transcription	Liver	Liver

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