Variant report

Variant	rs13104755
Chromosome Location	chr4:144292767-144292768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144290996..144292995-chr4:144295055..144297084,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10461277	0.87[AMR][1000 genomes]
rs10461278	0.82[AMR][1000 genomes]
rs10461279	0.87[AMR][1000 genomes]
rs1108827	0.87[AMR][1000 genomes]
rs13105258	0.87[AMR][1000 genomes]
rs13107986	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116594	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13118809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13130995	0.82[AMR][1000 genomes]
rs13137712	0.93[AMR][1000 genomes]
rs28410377	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34176541	0.87[AMR][1000 genomes]
rs34192902	0.87[AMR][1000 genomes]
rs34198661	0.82[AMR][1000 genomes]
rs34225955	0.87[AMR][1000 genomes]
rs34234071	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34398038	0.93[AMR][1000 genomes]
rs34583666	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	0.87[AMR][1000 genomes]
rs34652171	0.87[AMR][1000 genomes]
rs35027946	0.93[AMR][1000 genomes]
rs35095943	0.87[AMR][1000 genomes]
rs35549285	0.87[AMR][1000 genomes]
rs35607189	0.82[AMR][1000 genomes]
rs35909303	0.87[AMR][1000 genomes]
rs35971728	0.87[AMR][1000 genomes]
rs56085707	0.87[AMR][1000 genomes]
rs71610420	0.82[AMR][1000 genomes]
rs71610422	0.87[AMR][1000 genomes]
rs71610423	0.87[AMR][1000 genomes]
rs71610426	0.82[AMR][1000 genomes]
rs71610427	0.87[AMR][1000 genomes]
rs71610431	0.87[AMR][1000 genomes]
rs71610432	0.87[AMR][1000 genomes]
rs71610438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71610439	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71610440	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71610442	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7663712	0.82[AMR][1000 genomes]
rs9637656	0.87[AMR][1000 genomes]
rs9991495	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018566	chr4:144284927-144298930	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv437941	chr4:144285683-144295952	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv1021714	chr4:144288438-144299191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv1033347	chr4:144288438-144299563	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144272800-144299800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:144277400-144296800	Weak transcription	HSMMtube	muscle
3	chr4:144281200-144296800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:144281400-144296800	Weak transcription	Fetal Kidney	kidney
5	chr4:144281800-144293400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:144283000-144293400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:144283000-144295400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:144283000-144302200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:144283200-144293400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:144284000-144293600	Weak transcription	Spleen	Spleen
11	chr4:144284000-144296600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:144284000-144296600	Weak transcription	Fetal Thymus	thymus
13	chr4:144284200-144295600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:144284400-144299400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:144284600-144295200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:144284600-144295200	Weak transcription	K562	blood
17	chr4:144284800-144295600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:144286000-144293400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:144286000-144294600	Weak transcription	Placenta	Placenta
20	chr4:144286000-144295800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:144286000-144298200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:144287400-144294400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:144288200-144296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:144291000-144295800	Weak transcription	Small Intestine	intestine
25	chr4:144291000-144299800	Weak transcription	Pancreas	Pancrea
26	chr4:144291200-144293400	Weak transcription	NHEK	skin
27	chr4:144291400-144293200	Weak transcription	Psoas Muscle	Psoas
28	chr4:144291400-144293400	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:144291400-144293400	Weak transcription	Stomach Mucosa	stomach
30	chr4:144291400-144293600	Weak transcription	Adipose Nuclei	Adipose
31	chr4:144291400-144296600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:144291400-144296600	Weak transcription	Fetal Lung	lung
33	chr4:144291600-144293000	Weak transcription	Primary B cells from cord blood	blood
34	chr4:144291600-144293000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr4:144291600-144293200	Weak transcription	Brain Substantia Nigra	brain
36	chr4:144291600-144293200	Weak transcription	Colon Smooth Muscle	Colon
37	chr4:144291600-144293200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:144291600-144293200	Weak transcription	Fetal Heart	heart
39	chr4:144291600-144293200	Weak transcription	Ovary	ovary
40	chr4:144291600-144293200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:144291600-144293200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:144291600-144293200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:144291600-144293400	Weak transcription	Brain Anterior Caudate	brain
44	chr4:144291600-144293400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr4:144291600-144293400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr4:144291600-144293400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:144291600-144293400	Weak transcription	Right Ventricle	heart
48	chr4:144291600-144293600	Weak transcription	Brain Angular Gyrus	brain
49	chr4:144291600-144293600	Weak transcription	Gastric	stomach
50	chr4:144291600-144293600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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