Variant report

Variant	rs71610440
Chromosome Location	chr4:144308367-144308368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr4:144307994-144308411	HepG2	liver:	n/a	n/a
2	TEAD4	chr4:144307943-144308422	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:144307947..144309781-chr4:144310910..144313103,2	K562	blood:
2	chr4:144301169..144303738-chr4:144307598..144309127,2	K562	blood:
3	chr4:144257977..144259931-chr4:144307446..144310304,2	MCF-7	breast:

Variant related genes	Relation type
GAB1	TF binding region
ENSG00000109458	Chromatin interaction
ENSG00000178972	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10023724	1.00[ASN][1000 genomes]
rs10461277	0.87[AMR][1000 genomes]
rs10461278	0.82[AMR][1000 genomes]
rs10461279	0.87[AMR][1000 genomes]
rs1108827	0.87[AMR][1000 genomes]
rs13104755	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13105258	0.87[AMR][1000 genomes]
rs13107986	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13116594	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13127055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130995	0.82[AMR][1000 genomes]
rs13137712	0.93[AMR][1000 genomes]
rs17739332	1.00[ASN][1000 genomes]
rs28410377	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28743166	1.00[ASN][1000 genomes]
rs28925878	1.00[ASN][1000 genomes]
rs34176541	0.87[AMR][1000 genomes]
rs34192902	0.87[AMR][1000 genomes]
rs34198661	0.82[AMR][1000 genomes]
rs34225955	0.87[AMR][1000 genomes]
rs34234071	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34398038	0.93[AMR][1000 genomes]
rs34583666	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34589296	0.87[AMR][1000 genomes]
rs34652171	0.87[AMR][1000 genomes]
rs35027946	0.93[AMR][1000 genomes]
rs35095943	0.87[AMR][1000 genomes]
rs35549285	0.87[AMR][1000 genomes]
rs35607189	0.82[AMR][1000 genomes]
rs35909303	0.87[AMR][1000 genomes]
rs35971728	0.87[AMR][1000 genomes]
rs56085707	0.87[AMR][1000 genomes]
rs71610420	0.82[AMR][1000 genomes]
rs71610422	0.87[AMR][1000 genomes]
rs71610423	0.87[AMR][1000 genomes]
rs71610426	0.82[AMR][1000 genomes]
rs71610427	0.87[AMR][1000 genomes]
rs71610431	0.87[AMR][1000 genomes]
rs71610432	0.87[AMR][1000 genomes]
rs71610438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610439	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663712	0.82[AMR][1000 genomes]
rs9637656	0.87[AMR][1000 genomes]
rs9991495	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
2	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:144303000-144318000	Weak transcription	HSMM	muscle
4	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
5	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:144303200-144317800	Weak transcription	Gastric	stomach
7	chr4:144303400-144308600	Weak transcription	HepG2	liver
8	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
11	chr4:144303800-144308600	Weak transcription	Fetal Brain Female	brain
12	chr4:144304000-144308600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
16	chr4:144304200-144308400	Weak transcription	Stomach Mucosa	stomach
17	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:144304400-144308400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:144304400-144309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:144304600-144308600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:144304600-144310000	Weak transcription	HMEC	breast
23	chr4:144304600-144310000	Weak transcription	NHEK	skin
24	chr4:144304600-144311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
26	chr4:144304600-144317000	Weak transcription	K562	blood
27	chr4:144305200-144310200	Weak transcription	Liver	Liver
28	chr4:144305200-144311000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:144305600-144309400	Enhancers	Brain Anterior Caudate	brain
32	chr4:144305800-144310600	Weak transcription	Fetal Stomach	stomach
33	chr4:144306000-144308400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:144306000-144308400	Weak transcription	Right Atrium	heart
35	chr4:144306000-144308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:144306000-144308600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr4:144306000-144308600	Weak transcription	Right Ventricle	heart
38	chr4:144306000-144308800	Weak transcription	Esophagus	oesophagus
39	chr4:144306000-144310000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:144306000-144312000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:144306000-144312000	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:144306000-144312000	Weak transcription	Pancreas	Pancrea
43	chr4:144306200-144308400	Weak transcription	Ovary	ovary
44	chr4:144306200-144310200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:144306200-144311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr4:144306200-144311200	Enhancers	Brain Angular Gyrus	brain
47	chr4:144306400-144310000	Weak transcription	Osteobl	bone
48	chr4:144306600-144308800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:144306600-144310400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:144306600-144310400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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