Variant report

Variant	rs71610439
Chromosome Location	chr4:144306894-144306895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144296543..144298998-chr4:144305325..144308009,2	K562	blood:
2	chr4:144305860..144307696-chr4:144310881..144312432,2	MCF-7	breast:
3	chr4:144300243..144304529-chr4:144305070..144308118,4	K562	blood:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10023724	1.00[ASN][1000 genomes]
rs10461277	0.81[AMR][1000 genomes]
rs10461279	0.81[AMR][1000 genomes]
rs1108827	0.81[AMR][1000 genomes]
rs13104755	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13105258	0.81[AMR][1000 genomes]
rs13107986	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13116594	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118809	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13127055	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137712	0.87[AMR][1000 genomes]
rs17739332	1.00[ASN][1000 genomes]
rs28410377	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28743166	1.00[ASN][1000 genomes]
rs28925878	1.00[ASN][1000 genomes]
rs34176541	0.81[AMR][1000 genomes]
rs34192902	0.81[AMR][1000 genomes]
rs34225955	0.81[AMR][1000 genomes]
rs34234071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34398038	0.87[AMR][1000 genomes]
rs34583666	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34589296	0.81[AMR][1000 genomes]
rs34652171	0.81[AMR][1000 genomes]
rs35027946	0.87[AMR][1000 genomes]
rs35095943	0.81[AMR][1000 genomes]
rs35549285	0.81[AMR][1000 genomes]
rs35909303	0.81[AMR][1000 genomes]
rs35971728	0.81[AMR][1000 genomes]
rs56085707	0.81[AMR][1000 genomes]
rs71610422	0.81[AMR][1000 genomes]
rs71610423	0.81[AMR][1000 genomes]
rs71610427	0.81[AMR][1000 genomes]
rs71610431	0.81[AMR][1000 genomes]
rs71610432	0.81[AMR][1000 genomes]
rs71610438	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610440	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610442	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.81[AMR][1000 genomes]
rs9991495	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144300200-144307000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:144301600-144307800	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:144302200-144307000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:144302200-144307000	Enhancers	NHDF-Ad	bronchial
5	chr4:144302800-144308000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
7	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:144303000-144318000	Weak transcription	HSMM	muscle
9	chr4:144303200-144308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
11	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:144303200-144317800	Weak transcription	Gastric	stomach
13	chr4:144303400-144308600	Weak transcription	HepG2	liver
14	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
17	chr4:144303800-144307200	Enhancers	Fetal Lung	lung
18	chr4:144303800-144308600	Weak transcription	Fetal Brain Female	brain
19	chr4:144304000-144307600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:144304000-144307800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:144304000-144308600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
25	chr4:144304200-144307200	Enhancers	Brain Cingulate Gyrus	brain
26	chr4:144304200-144308400	Weak transcription	Stomach Mucosa	stomach
27	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:144304400-144307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:144304400-144308400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:144304400-144309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:144304600-144307600	Weak transcription	Fetal Intestine Large	intestine
33	chr4:144304600-144307600	Weak transcription	Fetal Intestine Small	intestine
34	chr4:144304600-144307800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:144304600-144308600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:144304600-144310000	Weak transcription	HMEC	breast
37	chr4:144304600-144310000	Weak transcription	NHEK	skin
38	chr4:144304600-144311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
40	chr4:144304600-144317000	Weak transcription	K562	blood
41	chr4:144305200-144310200	Weak transcription	Liver	Liver
42	chr4:144305200-144311000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:144305400-144307000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr4:144305600-144307200	Enhancers	Small Intestine	intestine
47	chr4:144305600-144307800	Enhancers	Psoas Muscle	Psoas
48	chr4:144305600-144309400	Enhancers	Brain Anterior Caudate	brain
49	chr4:144305800-144308200	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr4:144305800-144310600	Weak transcription	Fetal Stomach	stomach

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