The 2.0 version of rSNPBase

Variant report

Variant rs28925878
Chromosome Location chr4:144323634-144323635
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:144303400-144326600 Weak transcription Colonic Mucosa Colon
2 chr4:144309200-144327600 Weak transcription Esophagus oesophagus
3 chr4:144310200-144325600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr4:144312600-144323800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr4:144312600-144326400 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr4:144312600-144328600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr4:144312800-144324000 Weak transcription Fetal Intestine Small intestine
8 chr4:144312800-144331400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr4:144312800-144336800 Weak transcription Fetal Muscle Trunk muscle
10 chr4:144313000-144323800 Weak transcription Fetal Muscle Leg muscle
11 chr4:144313400-144324000 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr4:144313800-144332000 Weak transcription Placenta Amnion Placenta Amnion
13 chr4:144316800-144324400 Enhancers Brain Substantia Nigra brain
14 chr4:144317400-144323800 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr4:144317400-144327600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr4:144317800-144325800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr4:144318200-144325600 Weak transcription Lung lung
18 chr4:144318200-144327600 Weak transcription K562 blood
19 chr4:144318200-144337000 Weak transcription Fetal Intestine Large intestine
20 chr4:144318200-144362400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr4:144319200-144323800 Weak transcription Rectal Smooth Muscle rectum
22 chr4:144319200-144324800 Weak transcription Stomach Smooth Muscle stomach
23 chr4:144319200-144336600 Weak transcription Fetal Kidney kidney
24 chr4:144319400-144324000 Weak transcription HSMM muscle
25 chr4:144319800-144323800 Weak transcription Fetal Stomach stomach
26 chr4:144320000-144325600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr4:144320200-144324400 Enhancers Brain Cingulate Gyrus brain
28 chr4:144320200-144325600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr4:144320400-144324400 Enhancers Brain Inferior Temporal Lobe brain
30 chr4:144320600-144323800 Weak transcription GM12878-XiMat blood
31 chr4:144320600-144328600 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr4:144320800-144324400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr4:144320800-144326600 Weak transcription Stomach Mucosa stomach
34 chr4:144321000-144327600 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr4:144321200-144324400 Weak transcription Duodenum Mucosa Duodenum
36 chr4:144321400-144324200 Weak transcription Aorta Aorta
37 chr4:144321600-144323800 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr4:144321600-144324400 Weak transcription Right Atrium heart
39 chr4:144321600-144325600 Weak transcription Pancreas Pancrea
40 chr4:144321800-144330200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr4:144322200-144334000 Enhancers Fetal Heart heart
42 chr4:144323000-144326400 Enhancers Pancreatic Islets Pancreatic Islet
43 chr4:144323200-144335800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
44 chr4:144323400-144324000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr4:144323400-144324000 Enhancers Adipose Nuclei Adipose
46 chr4:144323400-144324000 Enhancers HSMMtube muscle
47 chr4:144323400-144324200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr4:144323400-144324200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
49 chr4:144323400-144324400 Enhancers Brain Anterior Caudate brain
50 chr4:144323400-144324600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015