The 2.0 version of rSNPBase

Variant report

Variant rs13153601
Chromosome Location chr5:111566136-111566137
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:111504800-111586400 Weak transcription Gastric stomach
2 chr5:111554200-111568400 Weak transcription Right Atrium heart
3 chr5:111558600-111584400 Weak transcription Psoas Muscle Psoas
4 chr5:111558800-111591400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:111562200-111566200 Weak transcription Fetal Brain Male brain
6 chr5:111562200-111570200 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr5:111562200-111574400 Weak transcription H1 Cell Line embryonic stem cell
8 chr5:111562400-111567800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr5:111562400-111570200 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr5:111562400-111570800 Weak transcription H9 Cell Line embryonic stem cell
11 chr5:111562800-111572000 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr5:111562800-111573000 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr5:111564200-111581400 Weak transcription Aorta Aorta
14 chr5:111564400-111566600 Weak transcription Fetal Kidney kidney
15 chr5:111564600-111571000 Weak transcription Spleen Spleen
16 chr5:111564600-111571600 Enhancers Hela-S3 cervix
17 chr5:111564600-111575800 Weak transcription Esophagus oesophagus
18 chr5:111564600-111576600 Weak transcription Ovary ovary
19 chr5:111564600-111580200 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr5:111564600-111586400 Weak transcription Lung lung
21 chr5:111564600-111590000 Weak transcription Left Ventricle heart
22 chr5:111564600-111609600 Weak transcription Pancreas Pancrea
23 chr5:111564800-111566200 Weak transcription Fetal Lung lung
24 chr5:111564800-111567000 Enhancers Fetal Heart heart
25 chr5:111564800-111567600 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr5:111564800-111567800 Weak transcription Placenta Amnion Placenta Amnion
27 chr5:111564800-111567800 Weak transcription Stomach Mucosa stomach
28 chr5:111564800-111568200 Weak transcription Adipose Nuclei Adipose
29 chr5:111564800-111569400 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr5:111564800-111571600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr5:111564800-111576000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:111564800-111577200 Weak transcription Liver Liver
33 chr5:111564800-111582800 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr5:111564800-111589400 Weak transcription HUVEC blood vessel
35 chr5:111565000-111566200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr5:111565000-111566200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:111565000-111566200 Weak transcription HMEC breast
38 chr5:111565000-111568000 Weak transcription A549 lung
39 chr5:111565000-111573800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr5:111565200-111567800 Weak transcription NHEK skin
41 chr5:111565200-111571000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015