The 2.0 version of rSNPBase

Variant report

Variant rs56288086
Chromosome Location chr5:111569009-111569010
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:111504800-111586400 Weak transcription Gastric stomach
2 chr5:111558600-111584400 Weak transcription Psoas Muscle Psoas
3 chr5:111558800-111591400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:111562200-111570200 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr5:111562200-111574400 Weak transcription H1 Cell Line embryonic stem cell
6 chr5:111562400-111570200 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr5:111562400-111570800 Weak transcription H9 Cell Line embryonic stem cell
8 chr5:111562800-111572000 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr5:111562800-111573000 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr5:111564200-111581400 Weak transcription Aorta Aorta
11 chr5:111564600-111571000 Weak transcription Spleen Spleen
12 chr5:111564600-111571600 Enhancers Hela-S3 cervix
13 chr5:111564600-111575800 Weak transcription Esophagus oesophagus
14 chr5:111564600-111576600 Weak transcription Ovary ovary
15 chr5:111564600-111580200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr5:111564600-111586400 Weak transcription Lung lung
17 chr5:111564600-111590000 Weak transcription Left Ventricle heart
18 chr5:111564600-111609600 Weak transcription Pancreas Pancrea
19 chr5:111564800-111569400 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr5:111564800-111571600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr5:111564800-111576000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr5:111564800-111577200 Weak transcription Liver Liver
23 chr5:111564800-111582800 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr5:111564800-111589400 Weak transcription HUVEC blood vessel
25 chr5:111565000-111573800 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr5:111565200-111571000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr5:111566200-111570400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr5:111567400-111602400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr5:111567600-111569200 Enhancers Rectal Mucosa Donor 31 rectum
30 chr5:111567800-111569200 Enhancers Fetal Heart heart
31 chr5:111567800-111569200 Enhancers HMEC breast
32 chr5:111567800-111569600 Enhancers Placenta Amnion Placenta Amnion
33 chr5:111567800-111570200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr5:111567800-111571000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr5:111568200-111569600 Strong transcription Adipose Nuclei Adipose
36 chr5:111568200-111570200 Weak transcription Stomach Mucosa stomach
37 chr5:111568400-111570800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr5:111568600-111609600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr5:111569000-111570400 Weak transcription A549 lung

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Last update: Aug 31, 2015