Variant report

Variant	rs13156389
Chromosome Location	chr5:113832798-113832799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113831498..113833430-chr5:113835261..113837627,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12515458	0.85[CEU][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12719181	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13153326	0.90[ASN][1000 genomes]
rs13154435	1.00[ASN][1000 genomes]
rs13154738	1.00[ASN][1000 genomes]
rs13156054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160352	0.97[ASN][1000 genomes]
rs13179209	0.90[ASN][1000 genomes]
rs1459782	0.92[CEU][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1459789	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1599176	0.92[CEU][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17136666	0.88[CEU][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17459453	0.92[ASN][1000 genomes]
rs1834400	0.92[ASN][1000 genomes]
rs1841248	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs1975851	0.93[CEU][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2125772	0.93[CEU][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2125773	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs34484477	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34512774	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34702458	0.95[ASN][1000 genomes]
rs35211026	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35386131	1.00[ASN][1000 genomes]
rs35495721	1.00[ASN][1000 genomes]
rs35641030	0.98[EUR][1000 genomes]
rs3891371	1.00[ASN][1000 genomes]
rs4466150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705506	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs4705671	0.87[CEU][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62380765	0.83[ASN][1000 genomes]
rs6870038	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6889371	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7730205	0.85[CEU][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs898354	0.87[CEU][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs977850	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv599433	chr5:113827287-113901090	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113813800-113843400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:113814000-113833600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113822400-113833600	Weak transcription	Right Ventricle	heart
4	chr5:113823000-113833400	Strong transcription	Liver	Liver
5	chr5:113825600-113834600	Weak transcription	Fetal Brain Female	brain
6	chr5:113826200-113833600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:113827400-113833400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:113827400-113834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:113827600-113836600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:113828200-113835800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:113828600-113833200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:113828600-113833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:113829600-113834000	Weak transcription	Fetal Heart	heart
14	chr5:113830000-113833200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:113830400-113833400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:113830600-113833000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr5:113832000-113834600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:113832000-113835600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:113832000-113836200	Weak transcription	Left Ventricle	heart

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