Variant report
| Variant | rs34702458 |
|---|---|
| Chromosome Location | chr5:113842967-113842968 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1119435 | 0.96[EUR][1000 genomes] |
| rs12719181 | 0.84[ASN][1000 genomes] |
| rs13153326 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13154435 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13154738 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13156054 | 0.95[ASN][1000 genomes] |
| rs13156389 | 0.95[ASN][1000 genomes] |
| rs13160352 | 0.93[ASN][1000 genomes] |
| rs13179209 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1459789 | 0.86[ASN][1000 genomes] |
| rs17136666 | 0.82[ASN][1000 genomes] |
| rs17459453 | 0.88[ASN][1000 genomes] |
| rs1834400 | 0.88[ASN][1000 genomes] |
| rs1850969 | 0.84[EUR][1000 genomes] |
| rs2125772 | 0.81[ASN][1000 genomes] |
| rs34484477 | 0.87[AFR][1000 genomes] |
| rs34512774 | 0.84[ASN][1000 genomes] |
| rs35211026 | 0.87[AFR][1000 genomes] |
| rs35386131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35495721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3891371 | 0.95[ASN][1000 genomes] |
| rs4466150 | 0.95[ASN][1000 genomes] |
| rs59388822 | 0.81[EUR][1000 genomes] |
| rs62380765 | 0.89[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs977850 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882729 | chr5:113743628-114497708 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv830452 | chr5:113798617-113975228 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020798 | chr5:113821828-114392727 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv537867 | chr5:113821828-114392727 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv599433 | chr5:113827287-113901090 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113813800-113843400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr5:113833400-113843400 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
