Variant report

Variant	rs17459453
Chromosome Location	chr5:113854743-113854744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1119435	0.81[ASN][1000 genomes]
rs12515458	0.91[CHD][hapmap]
rs12719181	0.86[ASN][1000 genomes]
rs13153326	0.83[ASN][1000 genomes]
rs13154435	0.92[ASN][1000 genomes]
rs13154738	0.92[ASN][1000 genomes]
rs13156054	0.92[ASN][1000 genomes]
rs13156389	0.92[ASN][1000 genomes]
rs13160352	0.90[ASN][1000 genomes]
rs13179209	0.82[ASN][1000 genomes]
rs1459782	0.91[CHD][hapmap]
rs1459789	0.83[ASN][1000 genomes]
rs1599176	0.91[CHD][hapmap]
rs17136666	0.84[ASN][1000 genomes]
rs1834400	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1841248	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2125773	0.91[CHD][hapmap]
rs34512774	0.86[ASN][1000 genomes]
rs34702458	0.88[ASN][1000 genomes]
rs35386131	0.92[ASN][1000 genomes]
rs35495721	0.92[ASN][1000 genomes]
rs3891371	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4466150	0.92[ASN][1000 genomes]
rs4705671	0.81[ASN][1000 genomes]
rs62380765	0.81[ASN][1000 genomes]
rs680075	0.85[AFR][1000 genomes]
rs6870038	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6889371	1.00[CHB][hapmap]
rs7730205	0.90[CHD][hapmap]
rs977850	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv599433	chr5:113827287-113901090	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113854600-113855200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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