Variant report

Variant	rs977850
Chromosome Location	chr5:113835388-113835389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113831498..113833430-chr5:113835261..113837627,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1119435	0.81[EUR][1000 genomes]
rs12515458	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12719181	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13153326	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13154435	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154738	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156054	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156389	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160352	0.97[ASN][1000 genomes]
rs13179209	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1459782	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1459789	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1599176	0.83[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17136666	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17459453	0.92[ASN][1000 genomes]
rs1834400	0.92[ASN][1000 genomes]
rs1841248	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1975851	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2125772	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2125773	0.81[EUR][1000 genomes]
rs34484477	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34512774	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34702458	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35211026	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35386131	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35495721	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35641030	0.82[EUR][1000 genomes]
rs3891371	1.00[ASN][1000 genomes]
rs4466150	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705506	0.81[EUR][1000 genomes]
rs4705671	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62380765	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6870038	1.00[JPT][hapmap]
rs6889371	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7730205	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs898354	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv599433	chr5:113827287-113901090	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113813800-113843400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:113827600-113836600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr5:113828200-113835800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:113832000-113835600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:113832000-113836200	Weak transcription	Left Ventricle	heart
6	chr5:113833400-113836200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:113833400-113836600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:113833400-113837000	Weak transcription	Liver	Liver
9	chr5:113833400-113843400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:113834600-113839000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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