Variant report

Variant	rs62380765
Chromosome Location	chr11:74540341-74540342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1119435	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13153326	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13154435	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13154738	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13156054	0.83[ASN][1000 genomes]
rs13156389	0.83[ASN][1000 genomes]
rs13160352	0.81[ASN][1000 genomes]
rs13179209	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17459453	0.81[ASN][1000 genomes]
rs1850969	0.84[EUR][1000 genomes]
rs34702458	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35386131	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35495721	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3891371	0.83[ASN][1000 genomes]
rs4466150	0.83[ASN][1000 genomes]
rs977850	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
5	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74502800-74545600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
3	chr11:74531600-74542400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:74531800-74540800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:74532600-74541000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:74533000-74540800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr11:74533000-74543000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:74533400-74545800	Weak transcription	Left Ventricle	heart
9	chr11:74533600-74546200	Weak transcription	Aorta	Aorta
10	chr11:74533600-74546200	Weak transcription	Psoas Muscle	Psoas
11	chr11:74533600-74546400	Weak transcription	Right Ventricle	heart
12	chr11:74533800-74545200	Weak transcription	Osteobl	bone
13	chr11:74533800-74553200	Weak transcription	Fetal Heart	heart
14	chr11:74534600-74544800	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:74535800-74544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:74536000-74546400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:74536200-74541200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:74536800-74541000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:74538200-74545800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:74538200-74545800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:74538200-74546400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:74538400-74541800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:74538400-74544000	Weak transcription	Adipose Nuclei	Adipose
24	chr11:74538400-74544200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:74538400-74544200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:74538400-74544400	Weak transcription	HSMM	muscle
27	chr11:74538400-74544600	Weak transcription	NH-A	brain
28	chr11:74538400-74544600	Weak transcription	NHEK	skin
29	chr11:74538400-74545000	Weak transcription	NHDF-Ad	bronchial
30	chr11:74538400-74545200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:74538400-74545200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:74538400-74545200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:74538400-74545200	Weak transcription	HepG2	liver
34	chr11:74538400-74545400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:74538400-74545400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:74538400-74545600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:74538400-74545600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:74538400-74545600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:74538400-74545600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:74538400-74545600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:74538400-74545600	Weak transcription	Gastric	stomach
42	chr11:74538400-74545600	Weak transcription	Lung	lung
43	chr11:74538400-74545600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:74538400-74545800	Weak transcription	Colonic Mucosa	Colon
45	chr11:74538400-74545800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:74538400-74545800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:74538400-74545800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:74538400-74545800	Weak transcription	HMEC	breast
49	chr11:74538400-74545800	Weak transcription	HUVEC	blood vessel
50	chr11:74538400-74546000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links