Variant report

Variant	rs35495721
Chromosome Location	chr5:113842926-113842927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1119435	0.96[EUR][1000 genomes]
rs12515458	0.83[ASN][1000 genomes]
rs12719181	0.88[ASN][1000 genomes]
rs13153326	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13154435	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154738	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156054	1.00[ASN][1000 genomes]
rs13156389	1.00[ASN][1000 genomes]
rs13160352	0.97[ASN][1000 genomes]
rs13179209	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1459782	0.82[ASN][1000 genomes]
rs1459789	0.90[ASN][1000 genomes]
rs1599176	0.82[ASN][1000 genomes]
rs17136666	0.86[ASN][1000 genomes]
rs17459453	0.92[ASN][1000 genomes]
rs1834400	0.92[ASN][1000 genomes]
rs1850969	0.84[EUR][1000 genomes]
rs1975851	0.84[ASN][1000 genomes]
rs2125772	0.86[ASN][1000 genomes]
rs34484477	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34512774	0.88[ASN][1000 genomes]
rs34702458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35211026	0.87[AFR][1000 genomes]
rs35386131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891371	1.00[ASN][1000 genomes]
rs4466150	1.00[ASN][1000 genomes]
rs4705671	0.83[ASN][1000 genomes]
rs59388822	0.81[EUR][1000 genomes]
rs62380765	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7730205	0.84[ASN][1000 genomes]
rs898354	0.84[ASN][1000 genomes]
rs977850	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv599433	chr5:113827287-113901090	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113813800-113843400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:113833400-113843400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links