Variant report

Variant	rs13158800
Chromosome Location	chr5:43177806-43177807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1001717	0.95[EUR][1000 genomes]
rs1054428	1.00[CHB][hapmap]
rs12657208	0.92[EUR][1000 genomes]
rs13153077	1.00[EUR][1000 genomes]
rs13153860	1.00[EUR][1000 genomes]
rs13154319	1.00[CHB][hapmap]
rs13154654	0.89[EUR][1000 genomes]
rs13155023	1.00[CHB][hapmap]
rs13159390	0.95[EUR][1000 genomes]
rs13160133	1.00[CHB][hapmap]
rs13161127	0.94[EUR][1000 genomes]
rs13163892	1.00[EUR][1000 genomes]
rs13164183	1.00[EUR][1000 genomes]
rs13166780	0.94[EUR][1000 genomes]
rs13167375	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs13167690	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169195	1.00[CHB][hapmap]
rs13170322	1.00[CHB][hapmap]
rs13171192	0.84[EUR][1000 genomes]
rs13171253	0.94[EUR][1000 genomes]
rs13172378	0.94[EUR][1000 genomes]
rs13174226	1.00[CHB][hapmap]
rs13174772	0.95[EUR][1000 genomes]
rs13176080	1.00[CHB][hapmap]
rs13178478	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13180496	1.00[CHB][hapmap]
rs13180902	1.00[CHB][hapmap]
rs13181290	0.94[EUR][1000 genomes]
rs13186091	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13186549	0.97[EUR][1000 genomes]
rs13189565	0.97[EUR][1000 genomes]
rs13189574	0.94[EUR][1000 genomes]
rs13190109	1.00[EUR][1000 genomes]
rs16873177	0.94[EUR][1000 genomes]
rs17242731	0.95[EUR][1000 genomes]
rs17242995	0.94[EUR][1000 genomes]
rs17243023	0.94[EUR][1000 genomes]
rs17243086	0.94[EUR][1000 genomes]
rs17243165	0.88[EUR][1000 genomes]
rs17243515	0.97[EUR][1000 genomes]
rs17302596	0.94[EUR][1000 genomes]
rs17302931	0.96[EUR][1000 genomes]
rs17303482	1.00[CHB][hapmap]
rs2005510	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085100	1.00[CHB][hapmap]
rs28548198	0.95[EUR][1000 genomes]
rs34071473	0.94[EUR][1000 genomes]
rs34205479	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34242142	1.00[EUR][1000 genomes]
rs34258100	1.00[EUR][1000 genomes]
rs34302880	0.91[EUR][1000 genomes]
rs34333393	0.94[EUR][1000 genomes]
rs34375419	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34448278	1.00[EUR][1000 genomes]
rs34517361	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34552214	0.94[EUR][1000 genomes]
rs34973629	0.94[EUR][1000 genomes]
rs34992478	0.94[EUR][1000 genomes]
rs35018789	0.94[EUR][1000 genomes]
rs35106307	1.00[EUR][1000 genomes]
rs35199583	0.95[EUR][1000 genomes]
rs35230086	0.94[EUR][1000 genomes]
rs35285338	1.00[EUR][1000 genomes]
rs35321959	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35397154	1.00[EUR][1000 genomes]
rs35484826	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593061	0.93[EUR][1000 genomes]
rs35645372	1.00[EUR][1000 genomes]
rs35665483	0.92[EUR][1000 genomes]
rs35673052	1.00[EUR][1000 genomes]
rs35754881	0.95[EUR][1000 genomes]
rs35759340	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35837951	1.00[ASN][1000 genomes]
rs35839054	0.97[EUR][1000 genomes]
rs35855029	1.00[EUR][1000 genomes]
rs35859204	0.97[EUR][1000 genomes]
rs35949944	0.94[EUR][1000 genomes]
rs35998500	0.94[EUR][1000 genomes]
rs36054188	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36106080	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36122541	0.94[EUR][1000 genomes]
rs36125638	0.99[EUR][1000 genomes]
rs3752831	1.00[EUR][1000 genomes]
rs3752832	1.00[EUR][1000 genomes]
rs3797306	0.95[EUR][1000 genomes]
rs3797307	0.95[EUR][1000 genomes]
rs3797308	0.95[EUR][1000 genomes]
rs3797309	0.95[EUR][1000 genomes]
rs56889091	1.00[EUR][1000 genomes]
rs56923657	0.92[EUR][1000 genomes]
rs58028166	0.97[EUR][1000 genomes]
rs632730	1.00[CHB][hapmap]
rs67190423	0.94[EUR][1000 genomes]
rs67596313	0.95[EUR][1000 genomes]
rs67756718	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71590635	0.94[EUR][1000 genomes]
rs71627575	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71627578	0.94[EUR][1000 genomes]
rs71627579	0.94[EUR][1000 genomes]
rs71627580	0.94[EUR][1000 genomes]
rs71627583	0.92[EUR][1000 genomes]
rs71627584	0.94[EUR][1000 genomes]
rs71627585	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627586	1.00[EUR][1000 genomes]
rs71627587	0.96[EUR][1000 genomes]
rs72748883	0.95[EUR][1000 genomes]
rs72748886	0.86[EUR][1000 genomes]
rs72748897	0.95[EUR][1000 genomes]
rs72750704	0.95[EUR][1000 genomes]
rs72750764	0.95[EUR][1000 genomes]
rs72750780	0.94[EUR][1000 genomes]
rs878234	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
7	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
8	nsv830274	chr5:43095551-43226087	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	138 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13158800	ZNF131	cis	Artery Tibial	GTEx
rs13158800	ZNF131	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43124000-43183000	Weak transcription	Small Intestine	intestine
2	chr5:43127600-43178000	Strong transcription	Dnd41	blood
3	chr5:43143400-43178200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:43156000-43178200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:43156600-43191200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:43157000-43178400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:43162000-43191600	Weak transcription	Fetal Brain Male	brain
8	chr5:43163800-43191800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:43164400-43191200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:43165000-43191200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:43169200-43179200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:43170000-43178000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:43170200-43178000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:43170600-43178000	Strong transcription	Primary T cells from cord blood	blood
15	chr5:43171200-43178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:43171200-43178000	Strong transcription	Fetal Thymus	thymus
17	chr5:43171400-43178000	Strong transcription	Hela-S3	cervix
18	chr5:43171400-43178200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:43171400-43178200	Strong transcription	Fetal Muscle Leg	muscle
20	chr5:43172200-43178400	Strong transcription	Liver	Liver
21	chr5:43172200-43178800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:43173400-43178000	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:43173600-43179400	Weak transcription	NHEK	skin
24	chr5:43175000-43179200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:43175000-43180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:43175000-43180800	Weak transcription	Colonic Mucosa	Colon
27	chr5:43175000-43191800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:43175200-43178000	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:43175200-43178400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:43175200-43179400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr5:43175200-43180000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:43175200-43180000	Weak transcription	Aorta	Aorta
33	chr5:43175200-43180000	Weak transcription	Osteobl	bone
34	chr5:43175200-43180400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr5:43175200-43180600	Weak transcription	Lung	lung
36	chr5:43175200-43180800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr5:43175200-43180800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr5:43175200-43180800	Weak transcription	Spleen	Spleen
39	chr5:43175200-43181800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:43175200-43182000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:43175200-43182200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr5:43175200-43183600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:43175200-43190200	Weak transcription	Fetal Intestine Small	intestine
44	chr5:43175200-43191000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr5:43175200-43191000	Weak transcription	Brain Angular Gyrus	brain
46	chr5:43175200-43191000	Weak transcription	Brain Anterior Caudate	brain
47	chr5:43175200-43191000	Weak transcription	Ovary	ovary
48	chr5:43175200-43191000	Weak transcription	NHLF	lung
49	chr5:43175200-43191200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr5:43175200-43191200	Weak transcription	Brain Inferior Temporal Lobe	brain

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