Variant report

Variant	rs13160879
Chromosome Location	chr5:36723559-36723560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36722920..36725168-chr5:36726179..36730650,3	MCF-7	breast:
2	chr5:36722181..36727364-chr5:36874838..36878996,5	MCF-7	breast:
3	chr5:36721531..36723917-chr5:36727097..36729088,2	K562	blood:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10056070	0.88[ASN][1000 genomes]
rs10067333	0.88[ASN][1000 genomes]
rs1025052	0.88[ASN][1000 genomes]
rs10491377	0.83[ASN][1000 genomes]
rs10941314	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12658012	0.87[ASN][1000 genomes]
rs12697368	0.84[ASN][1000 genomes]
rs13178390	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1566444	0.87[ASN][1000 genomes]
rs16903296	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1976377	0.87[ASN][1000 genomes]
rs2161609	0.87[ASN][1000 genomes]
rs6451305	0.92[ASN][1000 genomes]
rs6867429	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6878201	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6890097	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7709455	0.88[ASN][1000 genomes]
rs7734294	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs919300	0.83[ASN][1000 genomes]
rs919301	0.83[ASN][1000 genomes]
rs986341	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:36720200-36724200	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:36721000-36724800	Flanking Active TSS	GM12878-XiMat	blood
5	chr5:36721600-36724200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:36721800-36724000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:36721800-36724200	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:36721800-36724200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:36721800-36724600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:36722000-36725800	Enhancers	Fetal Muscle Leg	muscle
11	chr5:36722400-36723600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:36722400-36723600	Enhancers	Fetal Heart	heart
13	chr5:36722400-36723800	Weak transcription	Spleen	Spleen
14	chr5:36722800-36724200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:36723000-36723600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:36723000-36723800	Enhancers	Primary B cells from cord blood	blood
17	chr5:36723200-36723600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:36723200-36723800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr5:36723200-36724000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr5:36723200-36724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr5:36723200-36724200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr5:36723200-36724200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:36723200-36724200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:36723200-36724600	Enhancers	Duodenum Mucosa	Duodenum
25	chr5:36723400-36724000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:36723400-36724200	Weak transcription	Fetal Thymus	thymus
27	chr5:36723400-36724800	Weak transcription	Colonic Mucosa	Colon

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