Variant report

Variant	rs6867429
Chromosome Location	chr5:36718180-36718181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10056070	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10061940	0.86[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.81[MEX][hapmap]
rs10067333	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1025052	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10461973	0.85[ASN][1000 genomes]
rs10491377	0.92[ASN][1000 genomes]
rs10941314	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12658012	0.95[ASN][1000 genomes]
rs12697368	0.93[ASN][1000 genomes]
rs13160879	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13178390	0.99[ASN][1000 genomes]
rs1566444	0.95[ASN][1000 genomes]
rs16903296	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1976377	0.95[ASN][1000 genomes]
rs2161609	0.95[ASN][1000 genomes]
rs6451305	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6878201	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6890097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709455	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7734294	0.93[ASW][hapmap];0.93[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs919300	0.92[ASN][1000 genomes]
rs919301	0.92[ASN][1000 genomes]
rs986341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:36709200-36721800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:36710000-36721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:36711800-36721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:36712200-36721800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:36714000-36723200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:36715400-36718400	Weak transcription	GM12878-XiMat	blood
9	chr5:36716400-36718600	Enhancers	Fetal Heart	heart
10	chr5:36716400-36719600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:36716600-36718400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:36717000-36720200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:36717200-36721600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:36717400-36719000	Strong transcription	Primary B cells from cord blood	blood
15	chr5:36718000-36718400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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