Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36721531..36723917-chr5:36727097..36729088,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10056070	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10061940	0.86[CHB][hapmap]
rs10067333	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1025052	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10461973	0.84[ASN][1000 genomes]
rs10491377	0.91[ASN][1000 genomes]
rs10941314	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12658012	0.94[ASN][1000 genomes]
rs12697368	0.92[ASN][1000 genomes]
rs13160879	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13178390	0.98[ASN][1000 genomes]
rs1566444	0.94[ASN][1000 genomes]
rs16903296	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976377	0.94[ASN][1000 genomes]
rs2161609	0.94[ASN][1000 genomes]
rs6451305	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6878201	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7709455	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7734294	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919300	0.91[ASN][1000 genomes]
rs919301	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:36714000-36723200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:36718600-36722400	Weak transcription	Fetal Heart	heart
5	chr5:36720200-36724200	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:36721000-36723200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:36721000-36724800	Flanking Active TSS	GM12878-XiMat	blood
8	chr5:36721600-36724200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:36721800-36722400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:36721800-36724000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr5:36721800-36724200	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:36721800-36724200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:36721800-36724600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:36722000-36722400	Enhancers	Spleen	Spleen
15	chr5:36722000-36723000	Genic enhancers	Primary B cells from cord blood	blood
16	chr5:36722000-36725800	Enhancers	Fetal Muscle Leg	muscle

Quick Search: