Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10056070	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10061940	0.80[CHD][hapmap]
rs10067333	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1025052	0.95[ASN][1000 genomes]
rs10461973	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10941314	0.88[ASN][1000 genomes]
rs1122900	1.00[LWK][hapmap]
rs12658012	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12697368	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13160879	0.83[ASN][1000 genomes]
rs13178390	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1566444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16903296	0.91[ASN][1000 genomes]
rs1976377	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2161609	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6451305	0.91[ASN][1000 genomes]
rs6867429	0.92[ASN][1000 genomes]
rs6878201	0.91[ASN][1000 genomes]
rs6890097	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs736917	1.00[YRI][hapmap]
rs7709455	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7734294	0.86[CHD][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs919300	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919301	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986341	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv880571	chr5:36675699-36710205	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10491377	SLC1A3	Cis_1M	lymphoblastoid	RTeQTL
rs10491377	CAPSL	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36704000-36711000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:36705400-36711400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:36705800-36712600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:36706800-36710200	Weak transcription	Fetal Heart	heart
7	chr5:36707400-36707800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:36707400-36708600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr5:36707400-36710000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr5:36707400-36710400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:36707600-36709000	ZNF genes & repeats	GM12878-XiMat	blood
12	chr5:36707600-36709200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr5:36707600-36710000	ZNF genes & repeats	Primary B cells from cord blood	blood

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