Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36704160..36706693-chr5:36714837..36716744,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10056070	0.93[ASN][1000 genomes]
rs10061940	0.86[CHB][hapmap]
rs10067333	0.93[ASN][1000 genomes]
rs1025052	0.93[ASN][1000 genomes]
rs10461973	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10491377	0.88[ASN][1000 genomes]
rs12658012	0.92[ASN][1000 genomes]
rs12697368	0.89[ASN][1000 genomes]
rs13160879	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178390	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566444	0.92[ASN][1000 genomes]
rs16903296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1976377	0.92[ASN][1000 genomes]
rs2161609	0.92[ASN][1000 genomes]
rs6451305	0.95[ASN][1000 genomes]
rs6867429	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6878201	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6890097	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736917	1.00[YRI][hapmap]
rs7709455	0.93[ASN][1000 genomes]
rs7734294	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs919300	0.88[ASN][1000 genomes]
rs919301	0.88[ASN][1000 genomes]
rs986341	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:36709200-36721800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:36710000-36721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:36711800-36721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:36712200-36721800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:36713400-36716600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36714000-36723200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:36714200-36717400	Weak transcription	Primary B cells from cord blood	blood
10	chr5:36715400-36718400	Weak transcription	GM12878-XiMat	blood
11	chr5:36716000-36717000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr5:36716200-36717200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:36716200-36717600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:36716400-36716800	Enhancers	Osteobl	bone
15	chr5:36716400-36718600	Enhancers	Fetal Heart	heart
16	chr5:36716400-36719600	Strong transcription	Monocytes-CD14+_RO01746	blood

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