Variant report

Variant	rs7734294
Chromosome Location	chr5:36724793-36724794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36722920..36725168-chr5:36726179..36730650,3	MCF-7	breast:
2	chr5:36722181..36727364-chr5:36874838..36878996,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10056070	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10061940	0.80[CHD][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs10067333	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1025052	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10461973	0.83[ASN][1000 genomes]
rs10491377	0.90[ASN][1000 genomes]
rs10941314	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12658012	0.94[ASN][1000 genomes]
rs12697368	0.91[ASN][1000 genomes]
rs13160879	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13178390	0.97[ASN][1000 genomes]
rs1566444	0.94[ASN][1000 genomes]
rs16903296	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1976377	0.94[ASN][1000 genomes]
rs2161609	0.94[ASN][1000 genomes]
rs6451305	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6867429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6878201	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6890097	0.93[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7709455	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs919300	0.90[ASN][1000 genomes]
rs919301	0.90[ASN][1000 genomes]
rs986341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36721000-36724800	Flanking Active TSS	GM12878-XiMat	blood
2	chr5:36722000-36725800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:36723400-36724800	Weak transcription	Colonic Mucosa	Colon
4	chr5:36723800-36725400	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr5:36724000-36725400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr5:36724000-36725400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:36724000-36725600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr5:36724000-36725800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:36724200-36724800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:36724200-36725200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr5:36724200-36725400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr5:36724200-36725400	Flanking Active TSS	Primary B cells from peripheral blood	blood
13	chr5:36724200-36725400	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr5:36724200-36725400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:36724200-36725400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr5:36724400-36724800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr5:36724400-36724800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:36724400-36725000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr5:36724400-36725000	Weak transcription	Fetal Thymus	thymus
20	chr5:36724400-36725400	Active TSS	Primary T cells from cord blood	blood
21	chr5:36724400-36725600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:36724400-36726200	Weak transcription	Spleen	Spleen
23	chr5:36724600-36725200	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr5:36724600-36725400	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr5:36724600-36725400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr5:36724600-36725400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:36724600-36725400	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr5:36724600-36725400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:36724600-36725400	Active TSS	Duodenum Mucosa	Duodenum
30	chr5:36724600-36725600	Flanking Active TSS	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links