Variant report

Variant	rs13188642
Chromosome Location	chr5:79562105-79562106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79556019..79559236-chr5:79560726..79564339,3	K562	blood:
2	chr5:79550028..79553587-chr5:79560217..79564792,7	MCF-7	breast:
3	chr5:79549648..79554131-chr5:79561074..79564887,8	MCF-7	breast:
4	chr5:79559351..79560871-chr5:79561868..79564260,2	K562	blood:
5	chr5:79553026..79559305-chr5:79561133..79565052,9	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13153456	0.84[AMR][1000 genomes]
rs13179394	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13179638	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13181284	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13190128	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13190586	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17201222	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17260885	0.84[AMR][1000 genomes]
rs34006305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34286825	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34325845	0.84[AMR][1000 genomes]
rs34445888	0.84[AMR][1000 genomes]
rs34550632	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34700139	0.84[AMR][1000 genomes]
rs34844945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35155855	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35242457	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35314308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35327965	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35351510	0.81[EUR][1000 genomes]
rs35375564	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35408097	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35720953	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35762887	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35860790	0.84[AMR][1000 genomes]
rs35916537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67405165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71636211	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71636213	0.84[AMR][1000 genomes]
rs72776301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79553600-79568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:79554200-79564800	Weak transcription	Fetal Stomach	stomach
4	chr5:79554400-79563800	Weak transcription	Fetal Thymus	thymus
5	chr5:79554600-79564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:79560800-79565400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:79561200-79562600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:79561600-79562800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:79561600-79569800	Enhancers	Primary T cells from cord blood	blood
10	chr5:79562000-79563600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:79562000-79564600	Weak transcription	Primary hematopoietic stem cells	blood

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