Variant report

Variant	rs34286825
Chromosome Location	chr5:79569327-79569328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13153456	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13175768	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13179394	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13179638	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13181284	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13182247	1.00[AFR][1000 genomes]
rs13186162	1.00[AFR][1000 genomes]
rs13188642	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13190128	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13190586	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17201222	0.89[AMR][1000 genomes]
rs17260885	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34006305	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34324791	1.00[AFR][1000 genomes]
rs34325845	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34445888	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34550632	0.89[AMR][1000 genomes]
rs34700139	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34844945	0.89[AMR][1000 genomes]
rs35098852	1.00[AFR][1000 genomes]
rs35155855	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35162143	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35187099	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35242457	0.85[AMR][1000 genomes]
rs35271976	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35314308	0.89[AMR][1000 genomes]
rs35327965	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35351510	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35375564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35408097	0.89[AMR][1000 genomes]
rs35606070	1.00[AFR][1000 genomes]
rs35720953	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35762887	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35860790	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35885173	1.00[AFR][1000 genomes]
rs35916537	0.89[AMR][1000 genomes]
rs67405165	0.89[AMR][1000 genomes]
rs71636213	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71636215	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72776301	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79561600-79569800	Enhancers	Primary T cells from cord blood	blood
3	chr5:79563800-79569400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr5:79563800-79569400	Enhancers	Fetal Thymus	thymus
5	chr5:79566400-79569400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:79567000-79571000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:79567800-79571000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:79568600-79571000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:79569000-79569400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr5:79569200-79571000	Weak transcription	Primary T cells fromperipheralblood	blood

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