Variant report

Variant	rs35162143
Chromosome Location	chr5:79604544-79604545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:79604492-79604633	K562	blood:	n/a	n/a
2	YY1	chr5:79604364-79604717	H1-hESC	embryonic stem cell:	n/a	chr5:79604548-79604560
3	MAX	chr5:79604350-79604758	K562	blood:	n/a	n/a
4	YY1	chr5:79604432-79604764	K562	blood:	n/a	chr5:79604548-79604560
5	MYC	chr5:79604518-79604718	K562	blood:	n/a	n/a
6	YY1	chr5:79604377-79604598	GM12878	blood:	n/a	chr5:79604548-79604560
7	YY1	chr5:79604378-79604727	K562	blood:	n/a	chr5:79604548-79604560
8	USF1	chr5:79604412-79604646	K562	blood:	n/a	n/a
9	YY1	chr5:79604357-79604741	H1-hESC	embryonic stem cell:	n/a	chr5:79604548-79604560
10	MYC	chr5:79604426-79604718	K562	blood:	n/a	n/a
11	CTCF	chr5:79604440-79604590	GM12869	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79387918..79390143-chr5:79603120..79605214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251828	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13153456	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13172073	1.00[AFR][1000 genomes]
rs13172508	0.81[EUR][1000 genomes]
rs13175768	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13179394	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13182247	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13186162	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13190586	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17260885	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34286825	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34324791	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34325845	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34445888	0.83[EUR][1000 genomes]
rs34693098	0.91[EUR][1000 genomes]
rs34700139	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35098852	1.00[AFR][1000 genomes]
rs35187099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35271976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35327965	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35351510	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35375564	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35606070	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35720953	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35860790	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35885173	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71636213	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71636215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71636219	0.80[EUR][1000 genomes]
rs71636222	0.82[EUR][1000 genomes]
rs72763580	1.00[AFR][1000 genomes]
rs7715187	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79598800-79605400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79604400-79604800	Active TSS	Spleen	Spleen

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