Variant report
| Variant | rs13182247 |
|---|---|
| Chromosome Location | chr5:79649114-79649115 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1052345 | 0.80[CEU][hapmap] |
| rs13153456 | 1.00[AFR][1000 genomes] |
| rs13172073 | 1.00[AFR][1000 genomes] |
| rs13172508 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13175768 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs13179394 | 1.00[AFR][1000 genomes] |
| rs13186162 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13190586 | 1.00[AFR][1000 genomes] |
| rs17260885 | 1.00[AFR][1000 genomes] |
| rs34286825 | 1.00[AFR][1000 genomes] |
| rs34324791 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34325845 | 1.00[AFR][1000 genomes] |
| rs34693098 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34700139 | 1.00[AFR][1000 genomes] |
| rs35098852 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35162143 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35187099 | 0.85[EUR][1000 genomes] |
| rs35271976 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35327965 | 1.00[AFR][1000 genomes] |
| rs35351510 | 1.00[AFR][1000 genomes] |
| rs35606070 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35720953 | 1.00[AFR][1000 genomes] |
| rs35860790 | 1.00[AFR][1000 genomes] |
| rs35885173 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs71636213 | 1.00[AFR][1000 genomes] |
| rs71636215 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71636219 | 0.95[EUR][1000 genomes] |
| rs71636222 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72763580 | 1.00[AFR][1000 genomes] |
| rs7715187 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7727975 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79644800-79650200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 2 | chr5:79645000-79651200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
