Variant report

Variant	rs71636222
Chromosome Location	chr5:79667352-79667353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13172508	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13182247	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13186162	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34324791	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34693098	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35098852	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35162143	0.82[EUR][1000 genomes]
rs35187099	0.82[EUR][1000 genomes]
rs35271976	0.82[EUR][1000 genomes]
rs35606070	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35885173	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71636215	0.82[EUR][1000 genomes]
rs71636219	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7715187	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7727975	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv328596	chr5:79662132-79670063	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79666600-79667800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:79666600-79668000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:79666600-79669000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:79666600-79669400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:79666800-79668000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:79666800-79668200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:79666800-79669400	Weak transcription	Brain Anterior Caudate	brain
8	chr5:79667000-79667400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:79667000-79673000	Weak transcription	Brain Angular Gyrus	brain
10	chr5:79667200-79667600	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:79667200-79667600	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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