Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13153456	1.00[AFR][1000 genomes]
rs13172073	1.00[AFR][1000 genomes]
rs13172508	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13175768	1.00[AFR][1000 genomes]
rs13179394	1.00[AFR][1000 genomes]
rs13182247	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13186162	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13190586	1.00[AFR][1000 genomes]
rs17260885	1.00[AFR][1000 genomes]
rs34286825	1.00[AFR][1000 genomes]
rs34324791	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34325845	1.00[AFR][1000 genomes]
rs34693098	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34700139	1.00[AFR][1000 genomes]
rs35162143	1.00[AFR][1000 genomes]
rs35271976	1.00[AFR][1000 genomes]
rs35327965	1.00[AFR][1000 genomes]
rs35351510	1.00[AFR][1000 genomes]
rs35606070	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35720953	1.00[AFR][1000 genomes]
rs35860790	1.00[AFR][1000 genomes]
rs35885173	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71636213	1.00[AFR][1000 genomes]
rs71636215	1.00[AFR][1000 genomes]
rs71636219	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71636222	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763580	1.00[AFR][1000 genomes]
rs7715187	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7727975	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79672800-79673200	Enhancers	Brain Cingulate Gyrus	brain
2	chr5:79672800-79673200	Enhancers	Brain Substantia Nigra	brain
3	chr5:79672800-79673600	Enhancers	Brain Hippocampus Middle	brain
4	chr5:79673000-79673600	Enhancers	Brain Angular Gyrus	brain

Quick Search: