Variant report

Variant	rs34693098
Chromosome Location	chr5:79633454-79633455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13153456	0.83[EUR][1000 genomes]
rs13172508	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13175768	0.88[EUR][1000 genomes]
rs13182247	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186162	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17260885	0.83[EUR][1000 genomes]
rs34324791	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34325845	0.83[EUR][1000 genomes]
rs34700139	0.83[EUR][1000 genomes]
rs35098852	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35162143	0.91[EUR][1000 genomes]
rs35187099	0.91[EUR][1000 genomes]
rs35271976	0.91[EUR][1000 genomes]
rs35606070	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35860790	0.83[EUR][1000 genomes]
rs35885173	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71636215	0.91[EUR][1000 genomes]
rs71636219	0.89[EUR][1000 genomes]
rs71636222	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7715187	0.90[EUR][1000 genomes]
rs7727975	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79633000-79633600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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