Variant report
| Variant | rs71636219 |
|---|---|
| Chromosome Location | chr5:79662153-79662154 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:79661953..79664110-chr5:79666632..79668233,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs13172508 | 0.88[EUR][1000 genomes] |
| rs13182247 | 0.95[EUR][1000 genomes] |
| rs13186162 | 0.95[EUR][1000 genomes] |
| rs34324791 | 0.95[EUR][1000 genomes] |
| rs34693098 | 0.89[EUR][1000 genomes] |
| rs35098852 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35162143 | 0.80[EUR][1000 genomes] |
| rs35187099 | 0.80[EUR][1000 genomes] |
| rs35271976 | 0.80[EUR][1000 genomes] |
| rs35606070 | 0.95[EUR][1000 genomes] |
| rs35885173 | 0.86[EUR][1000 genomes] |
| rs71636215 | 0.80[EUR][1000 genomes] |
| rs71636222 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7715187 | 0.98[EUR][1000 genomes] |
| rs7727975 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv328596 | chr5:79662132-79670063 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79660400-79664800 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
