Variant report

Variant	rs13172508
Chromosome Location	chr5:79642556-79642557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13182247	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13186162	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34324791	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34693098	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35098852	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35162143	0.81[EUR][1000 genomes]
rs35187099	0.81[EUR][1000 genomes]
rs35271976	0.81[EUR][1000 genomes]
rs35606070	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35885173	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71636215	0.81[EUR][1000 genomes]
rs71636219	0.88[EUR][1000 genomes]
rs71636222	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7715187	0.89[EUR][1000 genomes]
rs7727975	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79638600-79648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79641000-79643600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:79641400-79644800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:79642200-79642600	Enhancers	Brain Substantia Nigra	brain
5	chr5:79642200-79643200	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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