Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13153456	1.00[AFR][1000 genomes]
rs13172073	1.00[AFR][1000 genomes]
rs13172508	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13175768	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13179394	1.00[AFR][1000 genomes]
rs13182247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13190586	1.00[AFR][1000 genomes]
rs17260885	1.00[AFR][1000 genomes]
rs34286825	1.00[AFR][1000 genomes]
rs34324791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34325845	1.00[AFR][1000 genomes]
rs34693098	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34700139	1.00[AFR][1000 genomes]
rs35098852	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35162143	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35187099	0.85[EUR][1000 genomes]
rs35271976	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35327965	1.00[AFR][1000 genomes]
rs35351510	1.00[AFR][1000 genomes]
rs35606070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35720953	1.00[AFR][1000 genomes]
rs35860790	1.00[AFR][1000 genomes]
rs35885173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71636213	1.00[AFR][1000 genomes]
rs71636215	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71636219	0.95[EUR][1000 genomes]
rs71636222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763580	1.00[AFR][1000 genomes]
rs7715187	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7727975	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79638600-79648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79644800-79650200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:79645000-79651200	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search: