Variant report

Variant	rs35187099
Chromosome Location	chr5:79612959-79612960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13153456	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13172508	0.81[EUR][1000 genomes]
rs13175768	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13179394	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13182247	0.85[EUR][1000 genomes]
rs13186162	0.85[EUR][1000 genomes]
rs13190586	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17260885	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34286825	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34324791	0.85[EUR][1000 genomes]
rs34325845	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34445888	0.83[EUR][1000 genomes]
rs34693098	0.91[EUR][1000 genomes]
rs34700139	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35162143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35271976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35327965	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35351510	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35375564	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35606070	0.85[EUR][1000 genomes]
rs35720953	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35860790	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35885173	0.88[EUR][1000 genomes]
rs71636213	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71636215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71636219	0.80[EUR][1000 genomes]
rs71636222	0.82[EUR][1000 genomes]
rs7715187	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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