Variant report

Variant	rs34445888
Chromosome Location	chr5:79571671-79571672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13153456	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13175768	0.80[EUR][1000 genomes]
rs13179394	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13179638	0.80[AMR][1000 genomes]
rs13181284	0.89[AMR][1000 genomes]
rs13188642	0.84[AMR][1000 genomes]
rs13190128	0.89[AMR][1000 genomes]
rs13190586	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17201222	0.84[AMR][1000 genomes]
rs17260885	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34006305	0.84[AMR][1000 genomes]
rs34286825	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34325845	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34550632	0.84[AMR][1000 genomes]
rs34700139	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34844945	0.84[AMR][1000 genomes]
rs35155855	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35162143	0.83[EUR][1000 genomes]
rs35187099	0.83[EUR][1000 genomes]
rs35242457	0.80[AMR][1000 genomes]
rs35271976	0.83[EUR][1000 genomes]
rs35314308	0.84[AMR][1000 genomes]
rs35327965	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35351510	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35375564	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35408097	0.84[AMR][1000 genomes]
rs35720953	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35860790	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35916537	0.84[AMR][1000 genomes]
rs67405165	0.84[AMR][1000 genomes]
rs71636213	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71636215	0.83[EUR][1000 genomes]
rs72776301	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:79571400-79571800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:79571600-79572000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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