Variant report

Variant	rs35155855
Chromosome Location	chr5:79566504-79566505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13153456	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13179394	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13179638	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13181284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13188642	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13190128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13190586	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17201222	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17260885	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34006305	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34286825	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34325845	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34445888	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34550632	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34700139	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34844945	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35242457	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35314308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35327965	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35351510	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35375564	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35408097	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35720953	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35762887	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35860790	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35916537	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67405165	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71636211	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71636213	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72776301	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79553600-79568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:79561600-79569800	Enhancers	Primary T cells from cord blood	blood
4	chr5:79563600-79569200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr5:79563800-79567800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:79563800-79567800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:79563800-79567800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:79563800-79568000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr5:79563800-79569400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr5:79563800-79569400	Enhancers	Fetal Thymus	thymus
11	chr5:79564000-79566600	Weak transcription	Placenta	Placenta
12	chr5:79564400-79566600	Enhancers	Thymus	Thymus
13	chr5:79564600-79567600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:79564600-79567800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:79564600-79568000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:79565400-79567000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr5:79566000-79566600	Enhancers	Primary B cells from peripheral blood	blood
18	chr5:79566000-79567000	Enhancers	GM12878-XiMat	blood
19	chr5:79566200-79566800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:79566200-79567000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:79566400-79566600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:79566400-79569400	Enhancers	Primary T helper cells PMA-I stimulated	--

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