Variant report

Variant	rs35408097
Chromosome Location	chr5:79560245-79560246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13153456	0.84[AMR][1000 genomes]
rs13179394	0.84[AMR][1000 genomes]
rs13179638	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13181284	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13188642	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13190128	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13190586	0.84[AMR][1000 genomes]
rs17201222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17260885	0.84[AMR][1000 genomes]
rs34006305	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34286825	0.89[AMR][1000 genomes]
rs34325845	0.84[AMR][1000 genomes]
rs34445888	0.84[AMR][1000 genomes]
rs34550632	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34700139	0.84[AMR][1000 genomes]
rs34844945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35155855	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35242457	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35314308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35327965	0.84[AMR][1000 genomes]
rs35375564	0.89[AMR][1000 genomes]
rs35720953	0.84[AMR][1000 genomes]
rs35762887	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35860790	0.84[AMR][1000 genomes]
rs35916537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67405165	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71636211	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71636213	0.84[AMR][1000 genomes]
rs72776301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79553600-79561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:79553600-79568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:79554200-79564800	Weak transcription	Fetal Stomach	stomach
5	chr5:79554400-79561600	Weak transcription	Primary T cells from cord blood	blood
6	chr5:79554400-79563800	Weak transcription	Fetal Thymus	thymus
7	chr5:79554600-79564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:79559600-79560600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:79559600-79560800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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