Variant report

Variant	rs13190437
Chromosome Location	chr5:60845634-60845635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11741726	0.82[ASN][1000 genomes]
rs12188685	0.80[ASN][1000 genomes]
rs13162534	0.80[ASN][1000 genomes]
rs13164150	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13165663	0.82[ASN][1000 genomes]
rs13166779	0.80[ASN][1000 genomes]
rs13167695	0.82[ASN][1000 genomes]
rs13168452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13170519	0.82[ASN][1000 genomes]
rs17338553	0.82[ASN][1000 genomes]
rs17340123	0.90[ASN][1000 genomes]
rs17424296	0.80[ASN][1000 genomes]
rs4582229	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60839000-60850000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60839400-60848200	Weak transcription	Fetal Heart	heart
3	chr5:60840000-60846400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:60840000-60847200	Weak transcription	Small Intestine	intestine
5	chr5:60840000-60847400	Weak transcription	Brain Substantia Nigra	brain
6	chr5:60840200-60846000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:60840200-60847600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:60840200-60847800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:60840200-60852200	Weak transcription	Left Ventricle	heart
10	chr5:60840800-60845800	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:60840800-60847400	Weak transcription	Brain Angular Gyrus	brain
12	chr5:60840800-60847800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:60841000-60846200	Weak transcription	Fetal Stomach	stomach
14	chr5:60842800-60846200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:60843000-60846200	Weak transcription	Primary B cells from cord blood	blood
16	chr5:60843000-60846200	Weak transcription	Osteobl	bone
17	chr5:60843000-60847000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:60843000-60847400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:60843000-60847800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:60843000-60848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:60843000-60848000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:60843000-60848400	Weak transcription	HSMMtube	muscle
23	chr5:60843200-60845800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr5:60843200-60847800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:60843400-60847800	Weak transcription	Brain Anterior Caudate	brain
26	chr5:60843600-60845800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:60843600-60847400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:60843800-60846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:60844000-60850800	Weak transcription	NHLF	lung
30	chr5:60844400-60850400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:60844600-60847800	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:60844800-60847200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:60844800-60847800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:60845200-60845800	Strong transcription	HSMM	muscle
35	chr5:60845200-60846200	Enhancers	Colon Smooth Muscle	Colon

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