Variant report

Variant	rs13167695
Chromosome Location	chr5:60820444-60820445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10514908	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10514909	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11738493	0.81[AMR][1000 genomes]
rs11741726	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188685	0.97[ASN][1000 genomes]
rs13158938	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13162534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13164150	0.82[ASN][1000 genomes]
rs13164700	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13165663	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166779	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13166910	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13168165	0.81[AMR][1000 genomes]
rs13170519	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174756	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13190437	0.82[ASN][1000 genomes]
rs17338553	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17340123	0.82[ASN][1000 genomes]
rs17424296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34993457	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66775554	0.82[EUR][1000 genomes]
rs7446236	0.81[AMR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
3	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:60767400-60821200	Weak transcription	Lung	lung
7	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
8	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:60781400-60821000	Weak transcription	Fetal Kidney	kidney
10	chr5:60785800-60820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:60787000-60820600	Weak transcription	Hela-S3	cervix
12	chr5:60788800-60821800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:60791400-60821200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:60791400-60821400	Weak transcription	Osteobl	bone
15	chr5:60792600-60821400	Weak transcription	Fetal Intestine Large	intestine
16	chr5:60792800-60821400	Weak transcription	NH-A	brain
17	chr5:60793400-60820800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:60793400-60821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:60797000-60821200	Weak transcription	Gastric	stomach
20	chr5:60798800-60820800	Weak transcription	Aorta	Aorta
21	chr5:60804800-60821200	Weak transcription	NHDF-Ad	bronchial
22	chr5:60805600-60820800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr5:60807600-60820800	Weak transcription	Fetal Stomach	stomach
24	chr5:60807600-60829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr5:60808200-60821600	Weak transcription	Fetal Thymus	thymus
26	chr5:60810600-60821000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:60811400-60820800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:60812400-60827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:60813000-60820600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:60813200-60821200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:60813400-60821200	Weak transcription	Adipose Nuclei	Adipose
32	chr5:60814400-60820800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr5:60814400-60820800	Weak transcription	Fetal Intestine Small	intestine
34	chr5:60815000-60820800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr5:60815000-60821000	Weak transcription	NHEK	skin
36	chr5:60815200-60820800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:60815200-60821600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:60815400-60833000	Weak transcription	Fetal Brain Male	brain
39	chr5:60815600-60820800	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:60815800-60820800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr5:60815800-60833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr5:60815800-60837200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:60816000-60820800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:60816000-60820800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr5:60816000-60821200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:60816000-60821200	Weak transcription	Brain Anterior Caudate	brain
47	chr5:60816000-60831200	Weak transcription	Ovary	ovary
48	chr5:60816000-60837800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr5:60816200-60820800	Weak transcription	Fetal Lung	lung
50	chr5:60816200-60821000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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